Iron in PDB 5ux1: Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus

The structure of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus, PDB code: 5ux1 was solved by D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	81.50 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.342, 78.274, 83.734, 90.00, 103.20, 90.00
R / Rfree (%)	19.2 / 21.5

The binding sites of Iron atom in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus (pdb code 5ux1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus, PDB code: 5ux1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:23.5 occ:0.80 OE2 A:GLU84 1.9 29.8 1.0 OE2 A:GLU167 1.9 54.6 1.0 OE1 A:GLU137 2.0 33.2 1.0 ND1 A:HIS170 2.2 24.2 1.0 O A:HOH441 2.4 27.3 1.0 CD A:GLU84 2.8 22.9 1.0 CD A:GLU167 2.9 49.7 1.0 OE1 A:GLU84 3.0 28.7 1.0 CE1 A:HIS170 3.0 24.9 1.0 CD A:GLU137 3.1 32.0 1.0 FE A:FE302 3.2 24.0 0.6 CG A:HIS170 3.3 22.9 1.0 OE1 A:GLU167 3.4 56.9 1.0 OE2 A:GLU137 3.5 37.6 1.0 CB A:HIS170 3.7 20.5 1.0 CG A:GLU167 4.2 42.4 1.0 CG A:GLU84 4.2 19.4 1.0 NE2 A:HIS170 4.2 26.4 1.0 OE1 A:GLU53 4.3 30.8 1.0 CG A:GLU137 4.4 28.2 1.0 CD2 A:HIS170 4.4 23.5 1.0 CA A:GLU167 4.4 30.2 1.0 CB A:GLU167 4.8 35.8 1.0 CB A:GLU137 4.9 22.0 1.0 ND1 A:HIS87 4.9 23.4 1.0

Iron binding site 2 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:24.0 occ:0.60 OE1 A:GLU53 1.9 30.8 1.0 ND1 A:HIS87 2.2 23.4 1.0 OE1 A:GLU84 2.2 28.7 1.0 CD A:GLU53 2.8 27.7 1.0 OE2 A:GLU53 3.0 33.0 1.0 O A:HOH441 3.1 27.3 1.0 CE1 A:HIS87 3.1 24.1 1.0 CD A:GLU84 3.2 22.9 1.0 FE A:FE301 3.2 23.5 0.8 CG A:HIS87 3.3 19.9 1.0 OE1 A:GLU167 3.3 56.9 1.0 OE2 A:GLU84 3.6 29.8 1.0 CB A:HIS87 3.6 17.0 1.0 OE2 A:GLU167 3.9 54.6 1.0 CD A:GLU167 4.0 49.7 1.0 CE1 A:HIS170 4.2 24.9 1.0 CG A:GLU53 4.2 22.6 1.0 NE2 A:HIS87 4.2 24.8 1.0 CD2 A:HIS87 4.3 22.1 1.0 ND1 A:HIS170 4.4 24.2 1.0 CA A:GLU84 4.5 15.2 1.0 CG A:GLU84 4.6 19.4 1.0 CB A:GLU53 4.7 19.4 1.0 CB A:GLU84 4.8 16.8 1.0 O A:GLU83 4.9 15.8 1.0

Iron binding site 3 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:22.4 occ:0.80 OE2 B:GLU84 2.0 26.8 1.0 OE1 B:GLU137 2.1 27.2 1.0 OE2 B:GLU167 2.1 35.4 1.0 ND1 B:HIS170 2.2 23.0 1.0 O B:HOH453 2.5 32.0 1.0 CD B:GLU84 2.8 23.0 1.0 CE1 B:HIS170 3.0 25.0 1.0 OE1 B:GLU84 3.0 24.9 1.0 CD B:GLU137 3.1 29.0 1.0 CD B:GLU167 3.2 33.3 1.0 FE B:FE302 3.2 22.3 0.6 CG B:HIS170 3.3 20.8 1.0 OE2 B:GLU137 3.4 33.6 1.0 OE1 B:GLU167 3.6 34.6 1.0 O B:HOH415 3.7 29.5 1.0 CB B:HIS170 3.7 19.8 1.0 NE2 B:HIS170 4.2 24.8 1.0 CG B:GLU84 4.2 19.3 1.0 OE1 B:GLU53 4.3 29.5 1.0 CD2 B:HIS170 4.3 24.0 1.0 CG B:GLU137 4.4 24.5 1.0 CG B:GLU167 4.4 29.9 1.0 CA B:GLU167 4.4 23.7 1.0 CB B:GLU167 4.9 26.6 1.0 ND1 B:HIS87 4.9 22.4 1.0

Iron binding site 4 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:22.3 occ:0.60 OE1 B:GLU53 1.9 29.5 1.0 OE1 B:GLU84 2.1 24.9 1.0 ND1 B:HIS87 2.2 22.4 1.0 CD B:GLU53 2.7 26.9 1.0 OE2 B:GLU53 2.9 32.1 1.0 CE1 B:HIS87 3.1 22.0 1.0 CD B:GLU84 3.2 23.0 1.0 FE B:FE301 3.2 22.4 0.8 O B:HOH453 3.2 32.0 1.0 CG B:HIS87 3.3 18.7 1.0 OE2 B:GLU84 3.5 26.8 1.0 CB B:HIS87 3.7 16.6 1.0 CE1 B:HIS170 4.0 25.0 1.0 OE2 B:GLU167 4.1 35.4 1.0 OE1 B:GLU167 4.2 34.6 1.0 CG B:GLU53 4.2 21.5 1.0 NE2 B:HIS87 4.3 21.1 1.0 ND1 B:HIS170 4.3 23.0 1.0 CD2 B:HIS87 4.4 19.3 1.0 CD B:GLU167 4.5 33.3 1.0 CA B:GLU84 4.5 16.3 1.0 CG B:GLU84 4.5 19.3 1.0 CB B:GLU84 4.8 17.2 1.0 CB B:GLU53 4.8 19.4 1.0

Iron binding site 5 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:19.9 occ:0.60 OE1 C:GLU53 1.9 23.4 1.0 OE2 C:GLU167 2.0 35.6 1.0 ND1 C:HIS87 2.1 20.0 1.0 OE1 C:GLU84 2.3 22.4 1.0 CD C:GLU53 2.8 25.4 1.0 O C:HOH480 2.9 21.8 1.0 CD C:GLU167 2.9 36.7 1.0 CE1 C:HIS87 2.9 18.4 1.0 OE2 C:GLU53 3.0 31.0 1.0 CG C:HIS87 3.2 16.5 1.0 FE C:FE302 3.2 22.3 0.8 CD C:GLU84 3.4 19.5 1.0 CB C:HIS87 3.6 15.0 1.0 OE1 C:GLU167 3.7 40.4 1.0 CG C:GLU167 3.8 31.2 1.0 OE2 C:GLU84 3.8 26.2 1.0 NE2 C:HIS87 4.1 19.6 1.0 CD2 C:HIS87 4.2 18.5 1.0 CG C:GLU53 4.2 21.2 1.0 CE1 C:HIS170 4.4 19.7 1.0 CA C:GLU84 4.5 13.6 1.0 ND1 C:HIS170 4.5 18.4 1.0 CG C:GLU84 4.7 17.6 1.0 CB C:GLU53 4.8 18.0 1.0 CB C:GLU84 4.9 14.8 1.0

Iron binding site 6 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe302 b:22.3 occ:0.80 OE1 C:GLU167 1.9 40.4 1.0 OE2 C:GLU84 1.9 26.2 1.0 OE1 C:GLU137 2.0 25.5 1.0 ND1 C:HIS170 2.2 18.4 1.0 O C:HOH480 2.3 21.8 1.0 OE2 C:GLU167 2.3 35.6 1.0 CD C:GLU167 2.4 36.7 1.0 CD C:GLU84 2.7 19.5 1.0 OE1 C:GLU84 2.7 22.4 1.0 CD C:GLU137 3.0 28.1 1.0 CE1 C:HIS170 3.1 19.7 1.0 FE C:FE301 3.2 19.9 0.6 CG C:HIS170 3.3 16.9 1.0 OE2 C:GLU137 3.4 32.8 1.0 CB C:HIS170 3.7 15.6 1.0 CG C:GLU167 3.9 31.2 1.0 CG C:GLU84 4.1 17.6 1.0 NE2 C:HIS170 4.3 17.8 1.0 CG C:GLU137 4.3 24.8 1.0 CD2 C:HIS170 4.4 16.8 1.0 CA C:GLU167 4.4 22.8 1.0 OE1 C:GLU53 4.5 23.4 1.0 CB C:GLU167 4.6 26.1 1.0 ND1 C:HIS87 4.7 20.0 1.0 CE1 C:HIS87 4.9 18.4 1.0 CB C:GLU137 5.0 19.5 1.0 O C:SER166 5.0 21.4 1.0

Iron binding site 7 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe301 b:25.2 occ:0.60 OE1 D:GLU53 1.9 29.9 1.0 ND1 D:HIS87 2.0 24.6 1.0 OE2 D:GLU167 2.1 41.1 1.0 OE1 D:GLU84 2.2 27.2 1.0 CD D:GLU53 2.8 29.6 1.0 CE1 D:HIS87 2.8 24.7 1.0 O D:HOH445 2.8 27.8 1.0 OE2 D:GLU53 3.0 35.7 1.0 CD D:GLU167 3.1 42.0 1.0 FE D:FE302 3.2 27.8 0.8 CG D:HIS87 3.2 21.0 1.0 CD D:GLU84 3.3 22.7 1.0 CB D:HIS87 3.7 19.3 1.0 OE2 D:GLU84 3.7 30.9 1.0 CG D:GLU167 3.9 38.2 1.0 OE1 D:GLU167 4.0 45.1 1.0 NE2 D:HIS87 4.0 25.9 1.0 CG D:GLU53 4.2 26.8 1.0 CD2 D:HIS87 4.2 22.9 1.0 CE1 D:HIS170 4.3 26.3 1.0 ND1 D:HIS170 4.4 23.8 1.0 CA D:GLU84 4.5 17.1 1.0 CG D:GLU84 4.6 21.6 1.0 CB D:GLU53 4.8 24.4 1.0 CB D:GLU84 4.9 19.0 1.0

Iron binding site 8 out of 8 in the Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe302 b:27.8 occ:0.80 OE2 D:GLU84 1.9 30.9 1.0 OE2 D:GLU167 2.0 41.1 1.0 OE1 D:GLU137 2.0 33.9 1.0 OE1 D:GLU167 2.1 45.1 1.0 ND1 D:HIS170 2.2 23.8 1.0 O D:HOH445 2.3 27.8 1.0 CD D:GLU167 2.3 42.0 1.0 CD D:GLU84 2.7 22.7 1.0 OE1 D:GLU84 2.8 27.2 1.0 CD D:GLU137 3.0 32.8 1.0 CE1 D:HIS170 3.1 26.3 1.0 FE D:FE301 3.2 25.2 0.6 CG D:HIS170 3.3 22.6 1.0 OE2 D:GLU137 3.4 38.8 1.0 CB D:HIS170 3.7 20.9 1.0 O D:HOH431 3.8 39.4 1.0 CG D:GLU167 3.8 38.2 1.0 CG D:GLU84 4.1 21.6 1.0 NE2 D:HIS170 4.2 23.4 1.0 OE1 D:GLU53 4.3 29.9 1.0 CG D:GLU137 4.4 29.8 1.0 CD2 D:HIS170 4.4 23.4 1.0 CA D:GLU167 4.4 29.9 1.0 CB D:GLU167 4.6 32.8 1.0 ND1 D:HIS87 4.7 24.6 1.0 CE1 D:HIS87 4.8 24.7 1.0 CB D:GLU137 5.0 26.0 1.0

D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 43 with Aldehyde Deformylating Oxygenase Activity From Synechococcus To Be Published.