Iron in PDB 5ux2: Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus

All present enzymatic activity of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus:
4.1.99.5;

The structure of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus, PDB code: 5ux2 was solved by D.K.Wilson, W.S.Mak, J.B.Siegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	109.06 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.986, 90.227, 109.060, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 25.4

The binding sites of Iron atom in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus (pdb code 5ux2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus, PDB code: 5ux2:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:36.9 occ:1.00 OE2 A:GLU109 2.2 34.2 1.0 OE2 A:GLU54 2.2 41.6 1.0 OE1 A:GLU109 2.3 33.2 1.0 O2 A:PPI303 2.3 35.6 1.0 OE2 A:GLU138 2.4 46.0 1.0 ND1 A:HIS141 2.5 39.4 1.0 CD A:GLU109 2.5 33.0 1.0 O1 A:PPI303 2.9 38.7 1.0 C1 A:PPI303 3.0 35.7 1.0 CD A:GLU54 3.0 38.2 1.0 OE1 A:GLU54 3.2 36.8 1.0 CE1 A:HIS141 3.3 40.5 1.0 FE A:FE302 3.3 31.6 1.0 CD A:GLU138 3.5 49.5 1.0 CG A:HIS141 3.6 34.8 1.0 CB A:HIS141 4.0 35.0 1.0 NE2 A:GLN104 4.0 36.0 1.0 CG A:GLU109 4.0 32.9 1.0 OE1 A:GLU138 4.1 44.2 1.0 CE2 A:PHE33 4.3 38.5 1.0 NE2 A:HIS141 4.4 39.0 1.0 CG A:GLU54 4.5 34.9 1.0 C2 A:PPI303 4.5 35.2 1.0 CD2 A:HIS141 4.6 38.4 1.0 CG A:GLU138 4.7 41.2 1.0 CB A:ALA29 4.7 34.5 1.0 CB A:GLU138 4.8 42.0 1.0 OE1 A:GLU26 4.9 32.8 1.0 CB A:GLU109 4.9 30.9 1.0 CZ A:PHE33 5.0 39.4 1.0 ND1 A:HIS57 5.0 23.7 1.0

Iron binding site 2 out of 4 in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:31.6 occ:1.00 OE1 A:GLU26 2.0 32.8 1.0 O1 A:PPI303 2.1 38.7 1.0 OE1 A:GLU54 2.2 36.8 1.0 ND1 A:HIS57 2.3 23.7 1.0 OE1 A:GLU138 2.7 44.2 1.0 CD A:GLU26 2.8 31.6 1.0 OE2 A:GLU26 2.8 36.4 1.0 OE2 A:GLU138 2.9 46.0 1.0 CE1 A:HIS57 3.1 24.6 1.0 CD A:GLU138 3.2 49.5 1.0 CD A:GLU54 3.2 38.2 1.0 C1 A:PPI303 3.3 35.7 1.0 FE A:FE301 3.3 36.9 1.0 CG A:HIS57 3.4 23.5 1.0 OE2 A:GLU54 3.6 41.6 1.0 CB A:HIS57 3.8 24.9 1.0 O2 A:PPI303 3.9 35.6 1.0 CG A:GLU26 4.2 30.2 1.0 NE2 A:HIS57 4.3 25.9 1.0 CD2 A:HIS57 4.4 23.3 1.0 C2 A:PPI303 4.5 35.2 1.0 CE1 A:HIS141 4.5 40.5 1.0 CA A:GLU54 4.5 36.0 1.0 CG A:GLU54 4.5 34.9 1.0 CG1 A:VAL134 4.6 26.3 1.0 C3 A:PPI303 4.6 34.8 1.0 CG A:GLU138 4.7 41.2 1.0 ND1 A:HIS141 4.7 39.4 1.0 CB A:GLU54 4.8 35.2 1.0 CB A:GLU26 4.9 28.9 1.0 OE2 A:GLU109 4.9 34.2 1.0

Iron binding site 3 out of 4 in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:24.5 occ:1.00 O2 B:PPI303 1.9 27.4 1.0 OE1 B:GLU54 2.0 25.6 1.0 OE1 B:GLU26 2.0 29.9 1.0 ND1 B:HIS57 2.2 20.8 1.0 OE2 B:GLU138 2.9 79.9 1.0 CE1 B:HIS57 3.0 21.5 1.0 CD B:GLU26 3.0 28.3 1.0 CD B:GLU54 3.1 26.2 1.0 C1 B:PPI303 3.1 29.1 1.0 OE2 B:GLU26 3.3 31.6 1.0 CG B:HIS57 3.3 21.5 1.0 FE B:FE302 3.4 29.8 1.0 OE2 B:GLU54 3.5 25.9 1.0 OE1 B:GLU138 3.5 81.1 1.0 O1 B:PPI303 3.6 25.9 1.0 CD B:GLU138 3.6 66.0 1.0 CB B:HIS57 3.7 21.9 1.0 NE2 B:HIS57 4.2 20.8 1.0 CE1 B:HIS141 4.3 33.1 1.0 CD2 B:HIS57 4.3 21.4 1.0 C2 B:PPI303 4.3 29.7 1.0 CG B:GLU54 4.4 26.0 1.0 CG B:GLU26 4.4 26.6 1.0 CA B:GLU54 4.4 25.6 1.0 C3 B:PPI303 4.5 32.1 1.0 ND1 B:HIS141 4.6 33.0 1.0 CB B:GLU54 4.6 25.6 1.0 CG1 B:VAL134 4.6 23.5 1.0 CB B:GLU26 4.8 26.7 1.0 CA B:GLU26 5.0 26.0 1.0

Iron binding site 4 out of 4 in the Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:29.8 occ:1.00 O1 B:PPI303 2.0 25.9 1.0 OE2 B:GLU109 2.1 31.3 1.0 OE2 B:GLU54 2.2 25.9 1.0 OE1 B:GLU109 2.3 28.6 1.0 ND1 B:HIS141 2.3 33.0 1.0 CD B:GLU109 2.5 30.5 1.0 OE1 B:GLU138 2.6 81.1 1.0 C1 B:PPI303 2.9 29.1 1.0 O2 B:PPI303 3.1 27.4 1.0 CD B:GLU54 3.1 26.2 1.0 CE1 B:HIS141 3.1 33.1 1.0 OE1 B:GLU54 3.3 25.6 1.0 FE B:FE301 3.4 24.5 1.0 CG B:HIS141 3.5 30.0 1.0 CD B:GLU138 3.5 66.0 1.0 OE2 B:GLU138 3.7 79.9 1.0 CB B:HIS141 3.9 29.9 1.0 CG B:GLU109 4.0 29.1 1.0 NE2 B:GLN104 4.1 28.2 1.0 C2 B:PPI303 4.3 29.7 1.0 NE2 B:HIS141 4.3 30.7 1.0 CE2 B:PHE33 4.4 29.4 1.0 CG B:GLU54 4.5 26.0 1.0 CD2 B:HIS141 4.5 32.3 1.0 CB B:ALA29 4.7 22.8 1.0 CG B:GLU138 4.9 56.5 1.0 CB B:GLU109 4.9 26.9 1.0 ND1 B:HIS57 4.9 20.8 1.0 CE1 B:HIS57 4.9 21.5 1.0

D.K.Wilson, W.S.Mak, J.B.Siegel. Protein 19 with Aldehyde Deformylating Oxidase Activity From Synechococcus To Be Published.