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Iron in PDB 5v0f: Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone

Protein crystallography data

The structure of Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone, PDB code: 5v0f was solved by S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.38 / 2.23
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 41.730, 41.730, 119.140, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 26.7

Other elements in 5v0f:

The structure of Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone also contains other interesting chemical elements:

Arsenic (As) 1 atom
Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone (pdb code 5v0f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone, PDB code: 5v0f:

Iron binding site 1 out of 1 in 5v0f

Go back to Iron Binding Sites List in 5v0f
Iron binding site 1 out of 1 in the Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:37.5
occ:0.34
O A:HOH307 2.8 40.0 1.0
O A:HOH303 2.9 39.0 1.0
NE2 A:HIS65 3.1 26.5 1.0
AS A:RXO201 3.5 47.7 0.7
NE2 A:GLN8 3.6 29.2 1.0
CE1 A:HIS65 3.6 30.6 1.0
C1 A:RXO201 3.7 39.0 0.7
C6 A:RXO201 3.7 35.9 0.7
CG1 A:VAL51 3.9 26.9 1.0
SG A:CYS99 4.0 61.8 1.0
CG2 A:VAL51 4.2 27.0 1.0
CD2 A:HIS65 4.3 22.7 1.0
OE2 A:GLU117 4.3 29.4 1.0
CD A:GLN8 4.5 30.3 1.0
C2 A:RXO201 4.5 33.3 0.7
CB A:VAL51 4.5 25.5 1.0
C5 A:RXO201 4.6 35.2 0.7
CB A:ALA10 4.7 21.7 1.0
O A:HOH325 4.7 34.9 1.0
OE1 A:GLN8 4.7 34.8 1.0
CB A:CYS99 4.8 51.0 1.0
CE1 A:TYR38 4.9 28.1 1.0
ND1 A:HIS65 4.9 30.4 1.0
CD1 A:ILE53 5.0 24.9 1.0

Reference:

S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen. Crystal Structure of C-As Lyase with Mutation K105A and Substrate Roxarsone. To Be Published.
Page generated: Sun Dec 13 16:14:03 2020

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