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Iron in PDB 5v28: 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans

Enzymatic activity of 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans

All present enzymatic activity of 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans:
1.13.11.6;

Protein crystallography data

The structure of 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans, PDB code: 5v28 was solved by K.Dornevil, F.Liu, A.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.21 / 2.72
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 58.602, 58.602, 231.523, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 26.2

Iron Binding Sites:

The binding sites of Iron atom in the 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans (pdb code 5v28). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans, PDB code: 5v28:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5v28

Go back to Iron Binding Sites List in 5v28
Iron binding site 1 out of 2 in the 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:41.5
occ:1.00
OE1 A:GLU57 2.0 38.0 1.0
ND1 A:HIS51 2.1 39.5 1.0
O A:HOH309 2.2 27.1 1.0
NE2 A:HIS95 2.2 32.2 1.0
OE2 A:GLU57 2.6 44.9 1.0
CD A:GLU57 2.7 42.5 1.0
CE1 A:HIS51 2.9 35.2 1.0
CE1 A:HIS95 3.1 34.1 1.0
CG A:HIS51 3.2 33.7 1.0
CD2 A:HIS95 3.3 31.6 1.0
O A:HOH310 3.3 22.9 1.0
CB A:HIS51 3.7 31.7 1.0
OE1 A:GLU110 3.9 64.2 1.0
NE2 A:HIS51 4.1 30.0 1.0
CG A:GLU57 4.2 34.2 1.0
CD2 A:HIS51 4.3 33.0 1.0
ND1 A:HIS95 4.3 29.8 1.0
CG A:HIS95 4.4 27.2 1.0
OD2 A:ASP53 4.7 42.2 1.0
CD A:GLU110 4.8 59.7 1.0
CB A:ASP53 4.9 37.1 1.0

Iron binding site 2 out of 2 in 5v28

Go back to Iron Binding Sites List in 5v28
Iron binding site 2 out of 2 in the 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4- Dioxygenase From Cupriavidus Metallidurans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:36.9
occ:1.00
SG A:CYS128 2.1 52.2 1.0
SG A:CYS165 2.3 43.4 1.0
SG A:CYS162 2.5 38.0 1.0
SG A:CYS125 2.6 47.4 1.0
CB A:CYS125 3.0 48.5 1.0
CB A:CYS162 3.2 40.1 1.0
CB A:CYS128 3.3 51.1 1.0
CB A:CYS165 3.4 42.3 1.0
N A:CYS128 3.5 43.5 1.0
CA A:CYS128 3.9 45.8 1.0
N A:CYS165 4.2 50.7 1.0
CB A:ALA127 4.3 56.3 1.0
CA A:CYS165 4.4 44.9 1.0
CA A:CYS125 4.5 46.4 1.0
C A:ALA127 4.6 49.9 1.0
C A:CYS128 4.6 51.5 1.0
CB A:GLN167 4.6 45.9 1.0
N A:GLY129 4.6 55.3 1.0
CA A:CYS162 4.7 44.7 1.0
CB A:HIS130 4.8 59.3 1.0
N A:HIS130 4.8 41.8 1.0
CA A:ALA127 4.8 48.5 1.0
N A:ALA127 4.9 57.5 1.0
C A:CYS165 5.0 50.5 1.0

Reference:

K.Dornevil, F.Liu, A.Liu. 2.72 Angstrom Crystal Structure of P97A 3-Hydroxyanthranilate-3,4-Dioxygenase From Cupriavidus Metallidurans To Be Published.
Page generated: Sun Dec 13 16:14:10 2020

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