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Iron in PDB 5v3v: Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant

Protein crystallography data

The structure of Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant, PDB code: 5v3v was solved by C.L.Varnado, E.Sorelle, J.Soman, J.S.Olson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.84 / 2.14
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 49.449, 122.303, 111.494, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 23.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant (pdb code 5v3v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant, PDB code: 5v3v:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5v3v

Go back to Iron Binding Sites List in 5v3v
Iron binding site 1 out of 2 in the Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:48.0
occ:1.00
FE A:HEM201 0.0 48.0 1.0
NA A:HEM201 2.0 51.2 1.0
ND A:HEM201 2.1 49.7 1.0
NE2 A:HIS77 2.1 48.9 1.0
NB A:HEM201 2.1 43.6 1.0
C A:CYN202 2.1 41.7 1.0
NC A:HEM201 2.1 45.9 1.0
CE1 A:HIS77 3.0 48.4 1.0
C4D A:HEM201 3.0 53.4 1.0
C4A A:HEM201 3.1 43.0 1.0
C1B A:HEM201 3.1 39.4 1.0
C1A A:HEM201 3.1 52.3 1.0
CD2 A:HIS77 3.1 45.9 1.0
C4B A:HEM201 3.1 42.2 1.0
C1D A:HEM201 3.1 50.9 1.0
C4C A:HEM201 3.1 53.7 1.0
C1C A:HEM201 3.1 39.8 1.0
N A:CYN202 3.2 49.0 1.0
CHA A:HEM201 3.4 50.1 1.0
CHB A:HEM201 3.4 38.8 1.0
CHC A:HEM201 3.5 39.1 1.0
CHD A:HEM201 3.5 51.3 1.0
ND1 A:HIS77 4.1 47.3 1.0
CG A:HIS77 4.2 50.1 1.0
C3D A:HEM201 4.3 47.8 1.0
C3A A:HEM201 4.3 45.7 1.0
C2B A:HEM201 4.3 44.5 1.0
C2A A:HEM201 4.3 51.0 1.0
C3B A:HEM201 4.3 38.5 1.0
C2D A:HEM201 4.3 50.2 1.0
C3C A:HEM201 4.3 53.2 1.0
C2C A:HEM201 4.4 43.6 1.0
NE1 A:TRP90 4.6 35.4 1.0

Iron binding site 2 out of 2 in 5v3v

Go back to Iron Binding Sites List in 5v3v
Iron binding site 2 out of 2 in the Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis: TYR26ALA Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:38.7
occ:1.00
FE B:HEM201 0.0 38.7 1.0
NE2 B:HIS77 2.0 39.7 1.0
NA B:HEM201 2.0 33.5 1.0
NB B:HEM201 2.1 28.3 1.0
ND B:HEM201 2.1 37.0 1.0
NC B:HEM201 2.1 35.8 1.0
C B:CYN202 2.1 35.6 1.0
CE1 B:HIS77 2.9 37.8 1.0
CD2 B:HIS77 3.0 35.5 1.0
C1C B:HEM201 3.0 28.2 1.0
C4A B:HEM201 3.1 31.3 1.0
C4B B:HEM201 3.1 37.2 1.0
C1D B:HEM201 3.1 34.0 1.0
C1A B:HEM201 3.1 40.6 1.0
C1B B:HEM201 3.1 28.7 1.0
C4D B:HEM201 3.1 34.5 1.0
C4C B:HEM201 3.1 36.6 1.0
N B:CYN202 3.2 38.8 1.0
CHC B:HEM201 3.4 38.7 1.0
CHB B:HEM201 3.5 35.2 1.0
CHD B:HEM201 3.5 32.4 1.0
CHA B:HEM201 3.5 36.8 1.0
ND1 B:HIS77 4.1 33.7 1.0
CG B:HIS77 4.1 39.9 1.0
C3A B:HEM201 4.3 32.5 1.0
C2C B:HEM201 4.3 42.2 1.0
C2A B:HEM201 4.3 36.4 1.0
C2D B:HEM201 4.3 39.0 1.0
C3C B:HEM201 4.3 45.0 1.0
C3B B:HEM201 4.3 36.9 1.0
C3D B:HEM201 4.3 36.8 1.0
C2B B:HEM201 4.3 33.9 1.0
NE1 B:TRP90 4.5 34.2 1.0

Reference:

C.L.Varnado, E.Sorelle, J.Soman, J.S.Olson. Crystal Structure of the Group II Truncated Hemoglobin From Bacillus Anthracis To Be Published.
Page generated: Sun Dec 13 16:14:17 2020

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