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Iron in PDB 5via: Crystal Structural of Leishmania Major Pseudoperoxidase

Protein crystallography data

The structure of Crystal Structural of Leishmania Major Pseudoperoxidase, PDB code: 5via was solved by G.Chreifi, D.Dejam, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.88 / 1.76
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.680, 63.680, 152.490, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structural of Leishmania Major Pseudoperoxidase (pdb code 5via). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structural of Leishmania Major Pseudoperoxidase, PDB code: 5via:

Iron binding site 1 out of 1 in 5via

Go back to Iron Binding Sites List in 5via
Iron binding site 1 out of 1 in the Crystal Structural of Leishmania Major Pseudoperoxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structural of Leishmania Major Pseudoperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:28.2
occ:1.00
FE A:HEM500 0.0 28.2 1.0
NA A:HEM500 2.0 21.5 1.0
NC A:HEM500 2.1 22.9 1.0
NB A:HEM500 2.1 21.7 1.0
ND A:HEM500 2.1 21.5 1.0
NE2 A:HIS206 2.3 26.2 1.0
SG A:CYS107 2.5 25.5 1.0
C1A A:HEM500 3.0 23.6 1.0
C4A A:HEM500 3.0 20.0 1.0
C1C A:HEM500 3.1 20.6 1.0
C4B A:HEM500 3.1 26.2 1.0
C4D A:HEM500 3.1 21.4 1.0
C1B A:HEM500 3.1 24.4 1.0
C4C A:HEM500 3.1 21.0 1.0
CD2 A:HIS206 3.1 25.3 1.0
C1D A:HEM500 3.2 20.9 1.0
CHA A:HEM500 3.4 25.6 1.0
CHC A:HEM500 3.4 21.9 1.0
CE1 A:HIS206 3.4 26.5 1.0
CB A:CYS107 3.5 26.9 1.0
CHB A:HEM500 3.5 20.4 1.0
CHD A:HEM500 3.5 23.9 1.0
C2A A:HEM500 4.2 21.8 1.0
C3A A:HEM500 4.2 19.7 1.0
C2B A:HEM500 4.3 20.8 1.0
C2C A:HEM500 4.3 20.5 1.0
C3B A:HEM500 4.3 26.0 1.0
C3C A:HEM500 4.3 19.9 1.0
CG A:HIS206 4.3 27.4 1.0
C3D A:HEM500 4.4 21.5 1.0
C2D A:HEM500 4.4 20.8 1.0
ND1 A:HIS206 4.5 28.5 1.0
N A:CYS107 4.5 27.6 1.0
CA A:CYS107 4.6 27.4 1.0
CE1 A:HIS223 4.7 27.9 1.0

Reference:

G.Chreifi, D.Dejam, T.L.Poulos. Crystal Structure and Functional Analysis of Leishmania Major Pseudoperoxidase. J. Biol. Inorg. Chem. V. 22 919 2017.
ISSN: ESSN 1432-1327
PubMed: 28584975
DOI: 10.1007/S00775-017-1469-9
Page generated: Sun Dec 13 16:14:45 2020

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