Atomistry » Iron » PDB 5whs-5xa4 » 5wve
Atomistry »
  Iron »
    PDB 5whs-5xa4 »
      5wve »

Iron in PDB 5wve: Apaf-1-Caspase-9 Holoenzyme

Other elements in 5wve:

The structure of Apaf-1-Caspase-9 Holoenzyme also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Apaf-1-Caspase-9 Holoenzyme (pdb code 5wve). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the Apaf-1-Caspase-9 Holoenzyme, PDB code: 5wve:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 1 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:23.1
occ:1.00
FE B:HEM201 0.0 23.1 1.0
ND B:HEM201 1.9 23.1 1.0
NA B:HEM201 2.0 23.3 1.0
NC B:HEM201 2.1 22.6 1.0
NB B:HEM201 2.1 23.2 1.0
NE2 B:HIS18 2.4 22.8 1.0
SD B:MET80 2.4 24.9 1.0
C4D B:HEM201 2.9 23.2 1.0
C1D B:HEM201 2.9 23.1 1.0
C1A B:HEM201 2.9 23.4 1.0
CD2 B:HIS18 3.0 22.7 1.0
C4C B:HEM201 3.0 22.8 1.0
C4A B:HEM201 3.0 23.4 1.0
C1B B:HEM201 3.1 23.5 1.0
C4B B:HEM201 3.1 23.4 1.0
CE1 B:HIS18 3.1 22.8 1.0
C1C B:HEM201 3.1 22.9 1.0
CHA B:HEM201 3.3 23.3 1.0
CHD B:HEM201 3.3 22.9 1.0
CHB B:HEM201 3.4 23.5 1.0
CE B:MET80 3.5 25.1 1.0
CHC B:HEM201 3.5 23.2 1.0
CG B:MET80 3.5 26.1 1.0
CG B:HIS18 3.9 22.7 1.0
ND1 B:HIS18 3.9 22.9 1.0
C3D B:HEM201 4.1 23.5 1.0
C2D B:HEM201 4.1 23.2 1.0
C2A B:HEM201 4.1 23.5 1.0
C3A B:HEM201 4.2 23.4 1.0
C3C B:HEM201 4.2 22.8 1.0
CB B:MET80 4.3 26.6 1.0
C2C B:HEM201 4.3 22.8 1.0
C2B B:HEM201 4.3 23.9 1.0
C3B B:HEM201 4.3 23.8 1.0
OH B:TYR67 4.7 33.9 1.0

Iron binding site 2 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 2 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:23.1
occ:1.00
FE D:HEM201 0.0 23.1 1.0
ND D:HEM201 1.9 23.1 1.0
NA D:HEM201 2.0 23.3 1.0
NC D:HEM201 2.1 22.6 1.0
NB D:HEM201 2.1 23.2 1.0
NE2 D:HIS18 2.4 22.8 1.0
SD D:MET80 2.4 24.9 1.0
C4D D:HEM201 2.9 23.2 1.0
C1D D:HEM201 2.9 23.1 1.0
C1A D:HEM201 2.9 23.4 1.0
CD2 D:HIS18 3.0 22.7 1.0
C4C D:HEM201 3.0 22.8 1.0
C4A D:HEM201 3.0 23.4 1.0
C1B D:HEM201 3.1 23.5 1.0
C4B D:HEM201 3.1 23.4 1.0
CE1 D:HIS18 3.1 22.8 1.0
C1C D:HEM201 3.1 22.9 1.0
CHA D:HEM201 3.3 23.3 1.0
CHD D:HEM201 3.3 22.9 1.0
CHB D:HEM201 3.4 23.5 1.0
CE D:MET80 3.5 25.1 1.0
CHC D:HEM201 3.5 23.2 1.0
CG D:MET80 3.5 26.1 1.0
CG D:HIS18 3.9 22.7 1.0
ND1 D:HIS18 3.9 22.9 1.0
C3D D:HEM201 4.1 23.5 1.0
C2D D:HEM201 4.1 23.2 1.0
C2A D:HEM201 4.1 23.5 1.0
C3A D:HEM201 4.2 23.4 1.0
C3C D:HEM201 4.2 22.8 1.0
CB D:MET80 4.3 26.6 1.0
C2C D:HEM201 4.3 22.8 1.0
C2B D:HEM201 4.3 23.9 1.0
C3B D:HEM201 4.3 23.8 1.0
OH D:TYR67 4.7 33.9 1.0

Iron binding site 3 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 3 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:23.1
occ:1.00
FE F:HEM201 0.0 23.1 1.0
ND F:HEM201 1.9 23.1 1.0
NA F:HEM201 2.0 23.3 1.0
NC F:HEM201 2.1 22.6 1.0
NB F:HEM201 2.1 23.2 1.0
NE2 F:HIS18 2.4 22.8 1.0
SD F:MET80 2.4 24.9 1.0
C4D F:HEM201 2.9 23.2 1.0
C1D F:HEM201 2.9 23.1 1.0
C1A F:HEM201 2.9 23.4 1.0
CD2 F:HIS18 3.0 22.7 1.0
C4C F:HEM201 3.0 22.8 1.0
C4A F:HEM201 3.0 23.4 1.0
C1B F:HEM201 3.1 23.5 1.0
C4B F:HEM201 3.1 23.4 1.0
CE1 F:HIS18 3.1 22.8 1.0
C1C F:HEM201 3.1 22.9 1.0
CHA F:HEM201 3.3 23.3 1.0
CHD F:HEM201 3.3 22.9 1.0
CHB F:HEM201 3.4 23.5 1.0
CE F:MET80 3.5 25.1 1.0
CHC F:HEM201 3.5 23.2 1.0
CG F:MET80 3.5 26.1 1.0
CG F:HIS18 3.9 22.7 1.0
ND1 F:HIS18 3.9 22.9 1.0
C3D F:HEM201 4.1 23.5 1.0
C2D F:HEM201 4.1 23.2 1.0
C2A F:HEM201 4.1 23.5 1.0
C3A F:HEM201 4.2 23.4 1.0
C3C F:HEM201 4.2 22.8 1.0
CB F:MET80 4.3 26.6 1.0
C2C F:HEM201 4.3 22.8 1.0
C2B F:HEM201 4.3 23.9 1.0
C3B F:HEM201 4.3 23.8 1.0
OH F:TYR67 4.7 33.9 1.0

Iron binding site 4 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 4 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:23.1
occ:1.00
FE H:HEM201 0.0 23.1 1.0
ND H:HEM201 1.9 23.1 1.0
NA H:HEM201 2.0 23.3 1.0
NC H:HEM201 2.1 22.6 1.0
NB H:HEM201 2.1 23.2 1.0
NE2 H:HIS18 2.4 22.8 1.0
SD H:MET80 2.4 24.9 1.0
C4D H:HEM201 2.9 23.2 1.0
C1D H:HEM201 2.9 23.1 1.0
C1A H:HEM201 2.9 23.4 1.0
CD2 H:HIS18 3.0 22.7 1.0
C4C H:HEM201 3.0 22.8 1.0
C4A H:HEM201 3.0 23.4 1.0
C1B H:HEM201 3.1 23.5 1.0
C4B H:HEM201 3.1 23.4 1.0
CE1 H:HIS18 3.1 22.8 1.0
C1C H:HEM201 3.1 22.9 1.0
CHA H:HEM201 3.3 23.3 1.0
CHD H:HEM201 3.3 22.9 1.0
CHB H:HEM201 3.5 23.5 1.0
CE H:MET80 3.5 25.1 1.0
CHC H:HEM201 3.5 23.2 1.0
CG H:MET80 3.5 26.1 1.0
CG H:HIS18 3.9 22.7 1.0
ND1 H:HIS18 3.9 22.9 1.0
C3D H:HEM201 4.1 23.5 1.0
C2D H:HEM201 4.1 23.2 1.0
C2A H:HEM201 4.1 23.5 1.0
C3A H:HEM201 4.2 23.4 1.0
C3C H:HEM201 4.2 22.8 1.0
CB H:MET80 4.3 26.6 1.0
C2C H:HEM201 4.3 22.8 1.0
C2B H:HEM201 4.3 23.9 1.0
C3B H:HEM201 4.3 23.8 1.0
OH H:TYR67 4.7 33.9 1.0

Iron binding site 5 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 5 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:23.1
occ:1.00
FE J:HEM201 0.0 23.1 1.0
ND J:HEM201 1.9 23.1 1.0
NA J:HEM201 2.0 23.3 1.0
NC J:HEM201 2.1 22.6 1.0
NB J:HEM201 2.1 23.2 1.0
NE2 J:HIS18 2.4 22.8 1.0
SD J:MET80 2.4 24.9 1.0
C4D J:HEM201 2.9 23.2 1.0
C1D J:HEM201 2.9 23.1 1.0
C1A J:HEM201 2.9 23.4 1.0
CD2 J:HIS18 3.0 22.7 1.0
C4C J:HEM201 3.0 22.8 1.0
C4A J:HEM201 3.0 23.4 1.0
C1B J:HEM201 3.1 23.5 1.0
C4B J:HEM201 3.1 23.4 1.0
CE1 J:HIS18 3.1 22.8 1.0
C1C J:HEM201 3.1 22.9 1.0
CHA J:HEM201 3.3 23.3 1.0
CHD J:HEM201 3.3 22.9 1.0
CHB J:HEM201 3.4 23.5 1.0
CE J:MET80 3.5 25.1 1.0
CHC J:HEM201 3.5 23.2 1.0
CG J:MET80 3.5 26.1 1.0
CG J:HIS18 3.9 22.7 1.0
ND1 J:HIS18 3.9 22.9 1.0
C3D J:HEM201 4.1 23.5 1.0
C2D J:HEM201 4.1 23.2 1.0
C2A J:HEM201 4.1 23.5 1.0
C3A J:HEM201 4.2 23.4 1.0
C3C J:HEM201 4.2 22.8 1.0
CB J:MET80 4.3 26.6 1.0
C2C J:HEM201 4.3 22.8 1.0
C2B J:HEM201 4.3 23.9 1.0
C3B J:HEM201 4.3 23.8 1.0
OH J:TYR67 4.7 33.9 1.0

Iron binding site 6 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 6 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Fe201

b:23.1
occ:1.00
FE L:HEM201 0.0 23.1 1.0
ND L:HEM201 1.9 23.1 1.0
NA L:HEM201 2.0 23.3 1.0
NC L:HEM201 2.1 22.6 1.0
NB L:HEM201 2.1 23.2 1.0
NE2 L:HIS18 2.4 22.8 1.0
SD L:MET80 2.4 24.9 1.0
C4D L:HEM201 2.9 23.2 1.0
C1D L:HEM201 2.9 23.1 1.0
C1A L:HEM201 2.9 23.4 1.0
CD2 L:HIS18 3.0 22.7 1.0
C4C L:HEM201 3.0 22.8 1.0
C4A L:HEM201 3.0 23.4 1.0
C1B L:HEM201 3.1 23.5 1.0
C4B L:HEM201 3.1 23.4 1.0
CE1 L:HIS18 3.1 22.8 1.0
C1C L:HEM201 3.1 22.9 1.0
CHA L:HEM201 3.3 23.3 1.0
CHD L:HEM201 3.3 22.9 1.0
CHB L:HEM201 3.5 23.5 1.0
CE L:MET80 3.5 25.1 1.0
CHC L:HEM201 3.5 23.2 1.0
CG L:MET80 3.5 26.1 1.0
CG L:HIS18 3.9 22.7 1.0
ND1 L:HIS18 3.9 22.9 1.0
C3D L:HEM201 4.1 23.5 1.0
C2D L:HEM201 4.1 23.2 1.0
C2A L:HEM201 4.1 23.5 1.0
C3A L:HEM201 4.2 23.4 1.0
C3C L:HEM201 4.2 22.8 1.0
CB L:MET80 4.3 26.6 1.0
C2C L:HEM201 4.3 22.8 1.0
C2B L:HEM201 4.3 23.9 1.0
C3B L:HEM201 4.3 23.8 1.0
OH L:TYR67 4.7 33.9 1.0

Iron binding site 7 out of 7 in 5wve

Go back to Iron Binding Sites List in 5wve
Iron binding site 7 out of 7 in the Apaf-1-Caspase-9 Holoenzyme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Apaf-1-Caspase-9 Holoenzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe201

b:23.1
occ:1.00
FE N:HEM201 0.0 23.1 1.0
ND N:HEM201 1.9 23.1 1.0
NA N:HEM201 2.0 23.3 1.0
NC N:HEM201 2.1 22.6 1.0
NB N:HEM201 2.1 23.2 1.0
NE2 N:HIS18 2.4 22.8 1.0
SD N:MET80 2.4 24.9 1.0
C4D N:HEM201 2.9 23.2 1.0
C1D N:HEM201 2.9 23.1 1.0
C1A N:HEM201 2.9 23.4 1.0
CD2 N:HIS18 3.0 22.7 1.0
C4C N:HEM201 3.0 22.8 1.0
C4A N:HEM201 3.0 23.4 1.0
C1B N:HEM201 3.1 23.5 1.0
C4B N:HEM201 3.1 23.4 1.0
CE1 N:HIS18 3.1 22.8 1.0
C1C N:HEM201 3.1 22.9 1.0
CHA N:HEM201 3.3 23.3 1.0
CHD N:HEM201 3.3 22.9 1.0
CHB N:HEM201 3.5 23.5 1.0
CE N:MET80 3.5 25.1 1.0
CHC N:HEM201 3.5 23.2 1.0
CG N:MET80 3.5 26.1 1.0
CG N:HIS18 3.9 22.7 1.0
ND1 N:HIS18 3.9 22.9 1.0
C3D N:HEM201 4.1 23.5 1.0
C2D N:HEM201 4.1 23.2 1.0
C2A N:HEM201 4.1 23.5 1.0
C3A N:HEM201 4.2 23.4 1.0
C3C N:HEM201 4.2 22.8 1.0
CB N:MET80 4.3 26.6 1.0
C2C N:HEM201 4.3 22.8 1.0
C2B N:HEM201 4.3 23.9 1.0
C3B N:HEM201 4.3 23.8 1.0
OH N:TYR67 4.7 33.9 1.0

Reference:

Y.Li, M.Zhou, Q.Hu, X.-C.Bai, W.Huang, S.H.W.Scheres, Y.Shi. Mechanistic Insights Into Caspase-9 Activation By the Structure of the Apoptosome Holoenzyme Proc. Natl. Acad. Sci. V. 114 1542 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28143931
DOI: 10.1073/PNAS.1620626114
Page generated: Sun Dec 13 16:16:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy