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Iron in PDB 5y4n: Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Enzymatic activity of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
All present enzymatic activity of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase:
1.12.2.1;
1.12.2.1;
Protein crystallography data
The structure of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase, PDB code: 5y4n
was solved by
K.Nishikawa,
S.Mochida,
T.Hiromoto,
N.Shibata,
Y.Higuchi,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 38.96 / 1.69 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 66.820, 98.790, 127.170, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 13.7 / 16.8 |
Other elements in 5y4n:
The structure of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase also contains other interesting chemical elements:
| Nickel | (Ni) | 1 atom |
| Magnesium | (Mg) | 1 atom |
Iron Binding Sites:
Pages:
>>> Page 1 <<< Page 2, Binding sites: 11 - 12;Binding sites:
The binding sites of Iron atom in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase (pdb code 5y4n). This binding sites where shown within 5.0 Angstroms radius around Iron atom.In total 12 binding sites of Iron where determined in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase, PDB code: 5y4n:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Iron binding site 1 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 1 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 2 out of 12 in 5y4n
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Iron Binding Sites List in 5y4n
Iron binding site 2 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 3 out of 12 in 5y4n
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Iron Binding Sites List in 5y4n
Iron binding site 3 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 4 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 4 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 5 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 5 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 6 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 6 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 7 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 7 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 8 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 8 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 9 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 9 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Iron binding site 10 out of 12 in 5y4n
Go back to
Iron Binding Sites List in 5y4n
Iron binding site 10 out
of 12 in the Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Aerobically Purified and Anaerobically Crystallized D. Vulgaris Miyazaki F [Nife]-Hydrogenase within 5.0Å range:
|
Reference:
K.Nishikawa,
S.Mochida,
T.Hiromoto,
N.Shibata,
Y.Higuchi.
Ni-Elimination From the Active Site of the Standard [Nife]-Hydrogenase Upon Oxidation By O2 To Be Published.
Page generated: Sun Dec 13 16:18:14 2020
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