Atomistry » Iron » PDB 5xzi-5ylw » 5y7r
Atomistry »
  Iron »
    PDB 5xzi-5ylw »
      5y7r »

Iron in PDB 5y7r: Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin

Protein crystallography data

The structure of Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin, PDB code: 5y7r was solved by H.J.Liao, T.S.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.26 / 1.96
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 73.441, 119.689, 66.207, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 21.5

Iron Binding Sites:

The binding sites of Iron atom in the Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin (pdb code 5y7r). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin, PDB code: 5y7r:

Iron binding site 1 out of 1 in 5y7r

Go back to Iron Binding Sites List in 5y7r
Iron binding site 1 out of 1 in the Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Quaternary Complex of Asqj-FE3+-2OG-Cyclopeptin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:54.6
occ:0.82
O B:HOH584 1.9 45.6 0.8
O1 B:AKG402 2.0 47.0 0.8
OD1 B:ASP136 2.2 45.3 1.0
NE2 B:HIS211 2.2 30.0 1.0
O5 B:AKG402 2.2 61.0 0.8
NE2 B:HIS134 2.2 32.5 1.0
C1 B:AKG402 2.6 46.5 0.8
C2 B:AKG402 2.7 48.9 0.8
CD2 B:HIS211 3.1 32.0 1.0
CG B:ASP136 3.2 37.2 1.0
CE1 B:HIS134 3.2 29.9 1.0
CD2 B:HIS134 3.2 31.8 1.0
CE1 B:HIS211 3.2 35.0 1.0
OD2 B:ASP136 3.4 39.9 1.0
H1 B:58K403 3.7 46.6 1.0
O B:HOH669 3.8 53.4 1.0
O2 B:AKG402 3.9 44.4 0.8
C3 B:AKG402 4.2 39.0 0.8
CG B:HIS211 4.2 30.9 1.0
ND1 B:HIS211 4.3 32.8 1.0
ND1 B:HIS134 4.3 33.2 1.0
H2 B:58K403 4.3 52.1 1.0
CG B:HIS134 4.3 32.7 1.0
H31 B:AKG402 4.5 46.8 0.8
C7 B:58K403 4.5 38.9 1.0
CB B:ASP136 4.6 32.5 1.0
OE1 B:GLN131 4.7 33.8 1.0
H41 B:AKG402 4.7 42.5 0.8
H9 B:58K403 4.7 51.3 1.0
H42 B:AKG402 4.7 42.5 0.8
ND2 B:ASN157 4.8 35.7 1.0
H32 B:AKG402 4.8 46.8 0.8
C8 B:58K403 4.8 43.4 1.0
C19 B:58K403 4.9 33.4 1.0
C4 B:AKG402 4.9 35.5 0.8
C14 B:58K403 4.9 42.8 1.0
H11 B:58K403 4.9 40.1 1.0
C9 B:58K403 4.9 40.9 1.0
C18 B:58K403 5.0 30.5 1.0

Reference:

H.J.Liao, J.Li, J.L.Huang, M.Davidson, I.Kurnikov, T.S.Lin, J.L.Lee, M.Kurnikova, Y.Guo, N.L.Chan, W.C.Chang. Insights Into the Desaturation of Cyclopeptin and Its C3 Epimer Catalyzed By A Non-Heme Iron Enzyme: Structural Characterization and Mechanism Elucidation. Angew. Chem. Int. Ed. Engl. V. 57 1831 2018.
ISSN: ESSN 1521-3773
PubMed: 29314482
DOI: 10.1002/ANIE.201710567
Page generated: Tue Aug 6 12:43:25 2024

Last articles

Cl in 3SIX
Cl in 3SIA
Cl in 3SI0
Cl in 3SHZ
Cl in 3SHC
Cl in 3SH6
Cl in 3SHA
Cl in 3SH3
Cl in 3SGW
Cl in 3SGL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy