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Iron in PDB 5ym3: CYP76AH1-4PI From Salvia Miltiorrhiza

Enzymatic activity of CYP76AH1-4PI From Salvia Miltiorrhiza

All present enzymatic activity of CYP76AH1-4PI From Salvia Miltiorrhiza:
1.14.13.190;

Protein crystallography data

The structure of CYP76AH1-4PI From Salvia Miltiorrhiza, PDB code: 5ym3 was solved by Z.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.13 / 2.60
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.103, 109.103, 105.709, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 23.1

Other elements in 5ym3:

The structure of CYP76AH1-4PI From Salvia Miltiorrhiza also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the CYP76AH1-4PI From Salvia Miltiorrhiza (pdb code 5ym3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the CYP76AH1-4PI From Salvia Miltiorrhiza, PDB code: 5ym3:

Iron binding site 1 out of 1 in 5ym3

Go back to Iron Binding Sites List in 5ym3
Iron binding site 1 out of 1 in the CYP76AH1-4PI From Salvia Miltiorrhiza


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of CYP76AH1-4PI From Salvia Miltiorrhiza within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:32.6
occ:1.00
FE A:HEM501 0.0 32.6 1.0
ND A:HEM501 2.0 33.0 1.0
NC A:HEM501 2.1 37.5 1.0
NA A:HEM501 2.1 35.9 1.0
NB A:HEM501 2.1 36.8 1.0
SG A:CYS437 2.6 34.2 1.0
C4C A:HEM501 3.0 37.7 1.0
C1D A:HEM501 3.0 38.4 1.0
C4A A:HEM501 3.1 30.6 1.0
C1B A:HEM501 3.1 35.1 1.0
C4D A:HEM501 3.1 32.2 1.0
C1A A:HEM501 3.1 37.3 1.0
O A:HOH676 3.1 35.1 1.0
C1C A:HEM501 3.1 38.1 1.0
C4B A:HEM501 3.2 37.2 1.0
CHD A:HEM501 3.3 35.9 1.0
CHB A:HEM501 3.5 32.4 1.0
CHA A:HEM501 3.5 32.4 1.0
CB A:CYS437 3.5 32.8 1.0
CHC A:HEM501 3.5 36.8 1.0
C3C A:HEM501 4.2 37.1 1.0
C2D A:HEM501 4.3 36.9 1.0
C2C A:HEM501 4.3 37.4 1.0
C3A A:HEM501 4.3 34.2 1.0
C3D A:HEM501 4.3 33.9 1.0
C2A A:HEM501 4.3 36.6 1.0
C2B A:HEM501 4.3 33.2 1.0
C3B A:HEM501 4.4 35.6 1.0
CA A:CYS437 4.4 34.0 1.0
O A:GLY298 4.5 41.5 1.0
N3 A:PIM502 4.9 53.7 1.0
CD A:PRO438 5.0 35.2 1.0

Reference:

Z.Chang, Z.Chang. N/A N/A.
Page generated: Sun Dec 13 16:18:43 2020

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