Iron in PDB 5ysm: Crystal Structure Analysis of RIF16

The structure of Crystal Structure Analysis of RIF16, PDB code: 5ysm was solved by F.W.Li, F.F.Qi, Y.L.Xiao, G.P.Zhao, S.Y.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.42 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.105, 70.335, 81.019, 90.00, 94.43, 90.00
R / Rfree (%)	18.3 / 23.4

The binding sites of Iron atom in the Crystal Structure Analysis of RIF16 (pdb code 5ysm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure Analysis of RIF16, PDB code: 5ysm:

Iron binding site 1 out of 1 in the Crystal Structure Analysis of RIF16


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Analysis of RIF16 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:10.1 occ:1.00 FE A:HEM501 0.0 10.1 1.0 ND A:HEM501 2.0 11.1 1.0 NA A:HEM501 2.0 10.3 1.0 NC A:HEM501 2.1 10.5 1.0 NB A:HEM501 2.1 10.3 1.0 SG A:CYS366 2.3 11.7 1.0 O A:HOH620 2.5 27.3 1.0 C1D A:HEM501 3.0 11.2 1.0 C4D A:HEM501 3.0 11.5 1.0 C1B A:HEM501 3.0 10.5 1.0 C1C A:HEM501 3.0 11.4 1.0 C4B A:HEM501 3.0 11.0 1.0 C4C A:HEM501 3.1 11.4 1.0 C1A A:HEM501 3.1 11.2 1.0 C4A A:HEM501 3.1 10.1 1.0 CHC A:HEM501 3.4 10.6 1.0 CHD A:HEM501 3.4 11.7 1.0 CB A:CYS366 3.4 10.6 1.0 CHA A:HEM501 3.4 11.4 1.0 CHB A:HEM501 3.4 10.2 1.0 CA A:CYS366 3.9 10.6 1.0 O A:ALA256 4.0 14.2 1.0 C2B A:HEM501 4.3 10.2 1.0 C2C A:HEM501 4.3 11.2 1.0 C3A A:HEM501 4.3 9.9 1.0 C3C A:HEM501 4.3 12.6 1.0 C2D A:HEM501 4.3 11.0 1.0 C3D A:HEM501 4.3 10.4 1.0 C2A A:HEM501 4.3 10.6 1.0 C3B A:HEM501 4.3 9.9 1.0 CB A:ALA256 4.4 13.7 1.0 C A:CYS366 4.7 11.6 1.0 C A:ALA256 4.7 14.7 1.0 N A:GLY368 4.7 10.7 1.0 N A:LEU367 4.7 10.8 1.0 O A:HOH732 4.8 45.5 1.0

F.Qi, C.Lei, F.Li, X.Zhang, J.Wang, W.Zhang, Z.Fan, W.Li, G.L.Tang, Y.Xiao, G.Zhao, S.Li. Deciphering the Late Steps of Rifamycin Biosynthesis. Nat Commun V. 9 2342 2018.
ISSN: ESSN 2041-1723
PubMed: 29904078
DOI: 10.1038/S41467-018-04772-X