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Iron in PDB 5z9j: Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism

Protein crystallography data

The structure of Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism, PDB code: 5z9j was solved by M.Lu, L.Lin, C.Zhang, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.33 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 56.956, 78.469, 97.680, 78.27, 72.63, 69.46
R / Rfree (%) 22.2 / 26.2

Iron Binding Sites:

The binding sites of Iron atom in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism (pdb code 5z9j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism, PDB code: 5z9j:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 5z9j

Go back to Iron Binding Sites List in 5z9j
Iron binding site 1 out of 4 in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:58.4
occ:1.00
FE A:HEM401 0.0 58.4 1.0
ND A:HEM401 2.0 24.5 1.0
NB A:HEM401 2.0 24.4 1.0
NC A:HEM401 2.1 22.4 1.0
NA A:HEM401 2.1 23.9 1.0
SG A:CYS347 2.6 24.7 1.0
O A:HOH591 2.9 41.1 1.0
C4D A:HEM401 3.0 21.8 1.0
C1D A:HEM401 3.0 20.4 1.0
C4B A:HEM401 3.0 22.7 1.0
C1C A:HEM401 3.1 20.9 1.0
C4C A:HEM401 3.1 20.5 1.0
C1B A:HEM401 3.1 24.8 1.0
C1A A:HEM401 3.1 21.9 1.0
C4A A:HEM401 3.2 23.3 1.0
CB A:CYS347 3.4 21.7 1.0
CHA A:HEM401 3.4 22.0 1.0
CHC A:HEM401 3.4 21.6 1.0
CHD A:HEM401 3.4 20.1 1.0
CHB A:HEM401 3.5 23.8 1.0
CA A:CYS347 4.0 23.9 1.0
O A:ASN237 4.0 23.7 1.0
C3D A:HEM401 4.2 22.1 1.0
C2D A:HEM401 4.2 21.6 1.0
C3B A:HEM401 4.3 23.6 1.0
C2B A:HEM401 4.3 24.9 1.0
C3C A:HEM401 4.3 20.5 1.0
C2C A:HEM401 4.3 19.7 1.0
C2A A:HEM401 4.4 24.2 1.0
C3A A:HEM401 4.4 22.4 1.0
CB A:ASN237 4.4 27.4 1.0
ND2 A:ASN237 4.6 30.3 1.0
C A:CYS347 4.6 24.3 1.0
O A:HOH640 4.6 36.6 1.0
N A:GLY349 4.7 24.7 1.0
N A:LEU348 4.7 25.3 1.0
C A:ASN237 4.7 24.9 1.0
CG A:ASN237 5.0 28.1 1.0

Iron binding site 2 out of 4 in 5z9j

Go back to Iron Binding Sites List in 5z9j
Iron binding site 2 out of 4 in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:35.6
occ:1.00
FE B:HEM401 0.0 35.6 1.0
NC B:HEM401 1.9 27.5 1.0
ND B:HEM401 2.0 22.8 1.0
NB B:HEM401 2.1 25.6 1.0
O B:HOH526 2.1 43.5 1.0
NA B:HEM401 2.2 22.3 1.0
SG B:CYS347 2.5 33.4 1.0
C4C B:HEM401 2.8 23.9 1.0
C1D B:HEM401 2.9 22.4 1.0
C1C B:HEM401 3.1 28.3 1.0
C4B B:HEM401 3.1 25.6 1.0
C4D B:HEM401 3.1 22.8 1.0
C1B B:HEM401 3.1 25.2 1.0
CHD B:HEM401 3.1 22.9 1.0
C1A B:HEM401 3.1 22.6 1.0
C4A B:HEM401 3.2 23.6 1.0
CB B:CYS347 3.4 23.4 1.0
CHC B:HEM401 3.5 27.6 1.0
CHA B:HEM401 3.5 24.3 1.0
CHB B:HEM401 3.5 25.4 1.0
CA B:CYS347 4.0 26.7 1.0
C3C B:HEM401 4.1 26.5 1.0
O B:ASN237 4.1 32.1 1.0
C2D B:HEM401 4.2 23.7 1.0
C2C B:HEM401 4.2 28.7 1.0
C3D B:HEM401 4.3 24.5 1.0
C3B B:HEM401 4.3 25.9 1.0
C2B B:HEM401 4.3 25.5 1.0
C2A B:HEM401 4.4 24.6 1.0
C3A B:HEM401 4.4 23.3 1.0
CB B:ASN237 4.5 32.9 1.0
ND2 B:ASN237 4.6 34.4 1.0
N B:GLY349 4.6 30.2 1.0
C B:CYS347 4.6 26.9 1.0
N B:LEU348 4.6 28.8 1.0
C B:ASN237 4.8 34.0 1.0

Iron binding site 3 out of 4 in 5z9j

Go back to Iron Binding Sites List in 5z9j
Iron binding site 3 out of 4 in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:33.1
occ:1.00
FE C:HEM401 0.0 33.1 1.0
NB C:HEM401 1.9 27.9 1.0
ND C:HEM401 2.0 26.7 1.0
NA C:HEM401 2.0 22.6 1.0
NC C:HEM401 2.0 26.6 1.0
SG C:CYS347 2.6 40.8 1.0
C4B C:HEM401 2.9 26.5 1.0
C1B C:HEM401 2.9 27.3 1.0
C4D C:HEM401 3.0 25.2 1.0
C1C C:HEM401 3.0 27.0 1.0
C1D C:HEM401 3.0 27.9 1.0
C1A C:HEM401 3.1 21.4 1.0
C4A C:HEM401 3.1 24.9 1.0
C4C C:HEM401 3.1 28.4 1.0
CHC C:HEM401 3.3 27.1 1.0
CHA C:HEM401 3.4 24.3 1.0
CHB C:HEM401 3.4 28.1 1.0
CB C:CYS347 3.5 32.3 1.0
CHD C:HEM401 3.5 29.6 1.0
O C:ASN237 4.0 32.1 1.0
CA C:CYS347 4.0 35.3 1.0
C3B C:HEM401 4.1 25.4 1.0
C2B C:HEM401 4.1 25.6 1.0
C3D C:HEM401 4.3 26.6 1.0
C2D C:HEM401 4.3 26.3 1.0
CB C:ASN237 4.3 33.3 1.0
C2C C:HEM401 4.3 28.3 1.0
C2A C:HEM401 4.3 22.4 1.0
C3C C:HEM401 4.3 28.1 1.0
C3A C:HEM401 4.3 22.1 1.0
ND2 C:ASN237 4.5 33.3 1.0
C C:CYS347 4.6 36.3 1.0
N C:LEU348 4.6 37.2 1.0
N C:GLY349 4.6 36.6 1.0
C C:ASN237 4.7 31.2 1.0
CG C:ASN237 4.8 32.9 1.0

Iron binding site 4 out of 4 in 5z9j

Go back to Iron Binding Sites List in 5z9j
Iron binding site 4 out of 4 in the Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:21.7
occ:1.00
FE D:HEM401 0.0 21.7 1.0
NB D:HEM401 1.9 16.8 1.0
NA D:HEM401 1.9 17.2 1.0
ND D:HEM401 2.1 19.4 1.0
NC D:HEM401 2.1 21.8 1.0
SG D:CYS347 2.5 26.4 1.0
C1B D:HEM401 2.9 14.9 1.0
O D:HOH596 2.9 68.8 1.0
C4A D:HEM401 2.9 16.1 1.0
C4B D:HEM401 3.0 17.7 1.0
C1A D:HEM401 3.0 16.1 1.0
C4D D:HEM401 3.1 16.6 1.0
C4C D:HEM401 3.1 22.4 1.0
C1D D:HEM401 3.1 20.6 1.0
C1C D:HEM401 3.1 20.7 1.0
CHB D:HEM401 3.2 14.4 1.0
CB D:CYS347 3.4 18.3 1.0
CHC D:HEM401 3.4 19.1 1.0
CHA D:HEM401 3.4 17.1 1.0
CHD D:HEM401 3.5 21.9 1.0
CA D:CYS347 3.9 20.6 1.0
C2B D:HEM401 4.1 16.3 1.0
C3B D:HEM401 4.1 19.0 1.0
C2A D:HEM401 4.2 17.1 1.0
C3A D:HEM401 4.2 17.2 1.0
O D:ASN237 4.3 26.4 1.0
C3C D:HEM401 4.4 23.4 1.0
C2C D:HEM401 4.4 23.7 1.0
C3D D:HEM401 4.4 16.9 1.0
C2D D:HEM401 4.4 20.8 1.0
O D:HOH569 4.5 52.7 1.0
ND2 D:ASN237 4.6 29.0 1.0
CB D:ASN237 4.6 24.9 1.0
N D:LEU348 4.6 25.4 1.0
C D:CYS347 4.6 23.5 1.0
N D:GLY349 4.7 25.6 1.0
C D:ASN237 4.9 25.1 1.0

Reference:

M.Lu, L.Lin, C.Zhang, Y.Chen. Identification of the Functions of Unusual Cytochrome P450-Like Monooxygenases Involved in Microbial Secondary Metablism To Be Published.
Page generated: Tue Aug 6 13:02:19 2024

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