Iron in PDB 5zgb: Cryo-Em Structure of the Red Algal Psi-Lhcr

All present enzymatic activity of Cryo-Em Structure of the Red Algal Psi-Lhcr:
1.97.1.12;

The structure of Cryo-Em Structure of the Red Algal Psi-Lhcr also contains other interesting chemical elements:

Magnesium

(Mg)

158 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Red Algal Psi-Lhcr (pdb code 5zgb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of the Red Algal Psi-Lhcr, PDB code: 5zgb:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:0.8 occ:1.00 FE1 A:SF4847 0.0 0.8 1.0 S3 A:SF4847 2.2 0.8 1.0 S4 A:SF4847 2.2 0.8 1.0 S2 A:SF4847 2.2 0.8 1.0 SG B:CYS566 3.0 69.3 1.0 FE2 A:SF4847 3.1 0.8 1.0 FE4 A:SF4847 3.1 0.8 1.0 FE3 A:SF4847 3.1 0.8 1.0 CB B:CYS566 3.5 69.3 1.0 CA B:CYS566 3.5 69.3 1.0 S1 A:SF4847 3.8 0.8 1.0 N B:CYS566 4.0 69.3 1.0 NH2 B:ARG704 4.1 61.7 1.0 SG A:CYS580 4.1 57.7 1.0 CZ3 B:TRP665 4.2 58.7 1.0 CE3 B:TRP665 4.6 58.7 1.0 C B:THR565 4.6 72.0 1.0 CB B:CYS557 4.6 71.8 1.0 O B:THR565 4.7 72.0 1.0 CB A:CYS580 4.7 57.7 1.0 C B:CYS566 4.8 69.3 1.0 CD1 A:ILE717 4.9 59.4 1.0

Iron binding site 2 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:0.8 occ:1.00 FE2 A:SF4847 0.0 0.8 1.0 S1 A:SF4847 2.2 0.8 1.0 S3 A:SF4847 2.2 0.8 1.0 S4 A:SF4847 2.2 0.8 1.0 SG A:CYS580 3.0 57.7 1.0 FE3 A:SF4847 3.0 0.8 1.0 FE1 A:SF4847 3.1 0.8 1.0 FE4 A:SF4847 3.1 0.8 1.0 CA A:CYS580 3.4 57.7 1.0 CB A:CYS580 3.5 57.7 1.0 N A:CYS580 3.6 57.7 1.0 S2 A:SF4847 3.8 0.8 1.0 CB A:CYS571 3.8 65.1 1.0 C A:THR579 4.2 61.6 1.0 O A:GLY573 4.2 62.1 1.0 C A:GLY573 4.4 62.1 1.0 O A:THR579 4.5 61.6 1.0 SG A:CYS571 4.5 65.1 1.0 CA A:GLY573 4.7 62.1 1.0 N A:THR579 4.7 61.6 1.0 CD1 B:ILE700 4.7 63.5 1.0 N A:GLY573 4.8 62.1 1.0 C A:CYS580 4.8 57.7 1.0

Iron binding site 3 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:0.8 occ:1.00 FE3 A:SF4847 0.0 0.8 1.0 S2 A:SF4847 2.2 0.8 1.0 S4 A:SF4847 2.2 0.8 1.0 S1 A:SF4847 2.2 0.8 1.0 FE2 A:SF4847 3.0 0.8 1.0 SG A:CYS571 3.0 65.1 1.0 FE4 A:SF4847 3.1 0.8 1.0 FE1 A:SF4847 3.1 0.8 1.0 CD1 A:ILE717 3.3 59.4 1.0 CB A:CYS571 3.5 65.1 1.0 S3 A:SF4847 3.7 0.8 1.0 N B:PRO560 4.2 78.7 1.0 C B:GLY559 4.2 77.7 1.0 CA B:PRO560 4.4 78.7 1.0 SG B:CYS566 4.4 69.3 1.0 O B:GLY559 4.4 77.7 1.0 CB A:PRO570 4.5 63.1 1.0 CB B:PRO560 4.6 78.7 1.0 CD B:PRO560 4.6 78.7 1.0 CG1 A:ILE717 4.7 59.4 1.0 CA B:GLY559 4.8 77.7 1.0 CA A:CYS571 4.9 65.1 1.0 CG2 A:ILE717 5.0 59.4 1.0

Iron binding site 4 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe847 b:0.8 occ:1.00 FE4 A:SF4847 0.0 0.8 1.0 S1 A:SF4847 2.2 0.8 1.0 S2 A:SF4847 2.2 0.8 1.0 S3 A:SF4847 2.2 0.8 1.0 SG B:CYS557 3.0 71.8 1.0 FE1 A:SF4847 3.1 0.8 1.0 CB B:CYS557 3.1 71.8 1.0 FE3 A:SF4847 3.1 0.8 1.0 FE2 A:SF4847 3.1 0.8 1.0 N B:GLY559 3.3 77.7 1.0 CA B:GLY559 3.3 77.7 1.0 C B:GLY559 3.6 77.7 1.0 O B:GLY559 3.7 77.7 1.0 S4 A:SF4847 3.8 0.8 1.0 O B:THR565 4.3 72.0 1.0 N B:PRO560 4.4 78.7 1.0 N B:ASP558 4.4 77.3 1.0 CA B:CYS557 4.5 71.8 1.0 C B:ASP558 4.5 77.3 1.0 C B:THR565 4.5 72.0 1.0 CD A:PRO574 4.7 65.3 1.0 N B:CYS566 4.8 69.3 1.0 C B:CYS557 4.8 71.8 1.0 N A:PRO574 4.9 65.3 1.0 CA A:GLY573 4.9 62.1 1.0 C A:GLY573 4.9 62.1 1.0 N B:THR565 5.0 72.0 1.0 CD B:PRO560 5.0 78.7 1.0 CA B:CYS566 5.0 69.3 1.0

Iron binding site 5 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:81.8 occ:1.00 FE1 C:SF4101 0.0 81.8 1.0 S2 C:SF4101 2.2 81.8 1.0 S3 C:SF4101 2.2 81.8 1.0 S4 C:SF4101 2.2 81.8 1.0 N C:CYS51 2.8 77.7 1.0 N C:LYS52 3.0 75.2 1.0 FE2 C:SF4101 3.0 81.8 1.0 SG C:CYS51 3.1 77.7 1.0 FE3 C:SF4101 3.1 81.8 1.0 FE4 C:SF4101 3.1 81.8 1.0 C C:GLY50 3.4 78.7 1.0 N C:GLY50 3.5 78.7 1.0 CA C:CYS51 3.5 77.7 1.0 CA C:GLY50 3.6 78.7 1.0 C C:CYS51 3.6 77.7 1.0 S1 C:SF4101 3.7 81.8 1.0 CB C:CYS51 3.8 77.7 1.0 CA C:LYS52 3.9 75.2 1.0 N C:ARG53 4.1 77.7 1.0 O C:GLY50 4.4 78.7 1.0 C C:LYS52 4.5 75.2 1.0 C C:VAL49 4.6 82.5 1.0 O C:CYS51 4.7 77.7 1.0 SG C:CYS48 4.8 85.7 1.0 CG1 C:VAL49 4.9 82.5 1.0 CB C:VAL49 4.9 82.5 1.0

Iron binding site 6 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:81.8 occ:1.00 FE2 C:SF4101 0.0 81.8 1.0 S3 C:SF4101 2.2 81.8 1.0 S1 C:SF4101 2.2 81.8 1.0 S4 C:SF4101 2.2 81.8 1.0 FE1 C:SF4101 3.0 81.8 1.0 SG C:CYS21 3.1 79.8 1.0 FE4 C:SF4101 3.1 81.8 1.0 FE3 C:SF4101 3.1 81.8 1.0 CB C:CYS21 3.1 79.8 1.0 CA C:CYS21 3.4 79.8 1.0 S2 C:SF4101 3.7 81.8 1.0 CD C:PRO22 3.9 81.4 1.0 SG C:CYS51 4.2 77.7 1.0 C C:CYS21 4.2 79.8 1.0 N C:PRO22 4.3 81.4 1.0 N C:CYS54 4.3 77.3 1.0 N C:CYS21 4.4 79.8 1.0 CB C:CYS54 4.6 77.3 1.0 CG1 C:VAL25 4.7 88.7 1.0 N C:ARG53 4.8 77.7 1.0 CB C:ARG53 4.8 77.7 1.0 CA C:CYS54 5.0 77.3 1.0

Iron binding site 7 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:81.8 occ:1.00 FE3 C:SF4101 0.0 81.8 1.0 S2 C:SF4101 2.2 81.8 1.0 S1 C:SF4101 2.2 81.8 1.0 S4 C:SF4101 2.2 81.8 1.0 CB C:CYS54 3.1 77.3 1.0 FE1 C:SF4101 3.1 81.8 1.0 FE4 C:SF4101 3.1 81.8 1.0 FE2 C:SF4101 3.1 81.8 1.0 CG2 C:VAL67 3.6 71.5 1.0 S3 C:SF4101 3.8 81.8 1.0 N C:CYS54 3.8 77.3 1.0 CA C:CYS54 4.1 77.3 1.0 SG C:CYS54 4.3 77.3 1.0 CA C:LYS52 4.4 75.2 1.0 N C:LYS52 4.5 75.2 1.0 N C:ARG53 4.6 77.7 1.0 CB C:VAL67 4.8 71.5 1.0 C C:LYS52 4.8 75.2 1.0 CG1 C:VAL67 4.9 71.5 1.0 CG2 C:VAL5 4.9 73.8 1.0 CD1 C:LEU26 4.9 84.1 1.0 N C:GLU55 5.0 76.2 1.0

Iron binding site 8 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:81.8 occ:1.00 FE4 C:SF4101 0.0 81.8 1.0 S3 C:SF4101 2.2 81.8 1.0 S2 C:SF4101 2.2 81.8 1.0 S1 C:SF4101 2.2 81.8 1.0 FE1 C:SF4101 3.1 81.8 1.0 FE2 C:SF4101 3.1 81.8 1.0 FE3 C:SF4101 3.1 81.8 1.0 SG C:CYS48 3.2 85.7 1.0 CG1 C:VAL25 3.2 88.7 1.0 S4 C:SF4101 3.8 81.8 1.0 CB C:CYS48 4.0 85.7 1.0 CA C:CYS48 4.2 85.7 1.0 N C:GLY50 4.4 78.7 1.0 CG2 C:VAL5 4.4 73.8 1.0 CB C:VAL25 4.4 88.7 1.0 SG C:CYS21 4.4 79.8 1.0 N C:VAL49 4.5 82.5 1.0 CG2 C:VAL25 4.6 88.7 1.0 CD1 C:LEU26 4.6 84.1 1.0 C C:CYS48 4.8 85.7 1.0 CD1 C:LEU23 4.9 85.9 1.0 CA C:GLY50 4.9 78.7 1.0

Iron binding site 9 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:0.9 occ:1.00 FE1 C:SF4102 0.0 0.9 1.0 S3 C:SF4102 2.2 0.9 1.0 S4 C:SF4102 2.2 0.9 1.0 S2 C:SF4102 2.2 0.9 1.0 SG C:CYS58 3.1 78.9 1.0 FE4 C:SF4102 3.1 0.9 1.0 FE2 C:SF4102 3.1 0.9 1.0 FE3 C:SF4102 3.1 0.9 1.0 CD C:PRO59 3.2 80.1 1.0 CG2 C:THR60 3.3 81.7 1.0 CA C:CYS58 3.5 78.9 1.0 N C:PRO59 3.5 80.1 1.0 C C:CYS58 3.6 78.9 1.0 S1 C:SF4102 3.8 0.9 1.0 CB C:CYS58 3.8 78.9 1.0 OG C:SER64 3.8 78.2 1.0 CG C:PRO59 4.1 80.1 1.0 N C:THR60 4.2 81.7 1.0 O C:CYS58 4.5 78.9 1.0 C C:PRO59 4.5 80.1 1.0 CB C:THR60 4.5 81.7 1.0 CA C:PRO59 4.5 80.1 1.0 O C:ALA57 4.8 78.0 1.0 N C:CYS58 4.8 78.9 1.0 OE1 C:GLN16 4.8 81.8 1.0 OG1 C:THR60 4.8 81.7 1.0 CA C:THR60 4.9 81.7 1.0 CB C:SER64 5.0 78.2 1.0

Iron binding site 10 out of 12 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:0.9 occ:1.00 FE2 C:SF4102 0.0 0.9 1.0 S3 C:SF4102 2.2 0.9 1.0 S1 C:SF4102 2.2 0.9 1.0 S4 C:SF4102 2.2 0.9 1.0 SG C:CYS17 3.1 79.8 1.0 FE4 C:SF4102 3.1 0.9 1.0 FE1 C:SF4102 3.1 0.9 1.0 FE3 C:SF4102 3.1 0.9 1.0 CD1 C:ILE65 3.1 75.7 1.0 CB C:CYS17 3.2 79.8 1.0 S2 C:SF4102 3.8 0.9 1.0 SG C:CYS11 4.0 85.3 1.0 CG1 C:ILE65 4.0 75.7 1.0 N C:CYS17 4.2 79.8 1.0 OG C:SER64 4.3 78.2 1.0 CA C:CYS17 4.4 79.8 1.0 CB C:ALA40 4.5 86.0 1.0 SG C:CYS58 4.6 78.9 1.0 N C:THR15 4.9 83.4 1.0 CB C:CYS11 5.0 85.3 1.0

X.Pi, L.Tian, H.E.Dai, X.Qin, L.Cheng, T.Kuang, S.F.Sui, J.R.Shen. Unique Organization of Photosystem I-Light-Harvesting Supercomplex Revealed By Cryo-Em From A Red Alga Proc. Natl. Acad. Sci. V. 115 4423 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29632169
DOI: 10.1073/PNAS.1722482115