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Iron in PDB 5zji: Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II

Enzymatic activity of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II

All present enzymatic activity of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II:
1.97.1.12;

Other elements in 5zji:

The structure of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II also contains other interesting chemical elements:

Magnesium (Mg) 202 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II (pdb code 5zji). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II, PDB code: 5zji:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 5zji

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Iron binding site 1 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:45.0
occ:1.00
 FE1 A:SF4853 0.0 45.0 1.0
S4 A:SF4853 2.0 45.0 1.0
S2 A:SF4853 2.0 45.0 1.0
S3 A:SF4853 2.1 45.0 1.0
FE3 A:SF4853 2.9 45.0 1.0
FE2 A:SF4853 2.9 45.0 1.0
FE4 A:SF4853 2.9 45.0 1.0
SG B:CYS559 3.0 35.1 1.0
CB B:CYS559 3.3 35.1 1.0
S1 A:SF4853 3.6 45.0 1.0
CB A:PRO576 4.2 35.0 1.0
N A:PRO576 4.3 35.0 1.0
CA A:PRO576 4.4 35.0 1.0
CD1 B:ILE702 4.5 29.8 1.0
CD A:PRO576 4.5 35.0 1.0
C A:GLY575 4.6 36.7 1.0
CA B:CYS559 4.7 35.1 1.0
CG A:PRO576 4.8 35.0 1.0
O A:GLY575 4.9 36.7 1.0

Iron binding site 2 out of 12 in 5zji

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Iron binding site 2 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:45.0
occ:1.00
 FE2 A:SF4853 0.0 45.0 1.0
S3 A:SF4853 2.0 45.0 1.0
S1 A:SF4853 2.1 45.0 1.0
S4 A:SF4853 2.1 45.0 1.0
FE3 A:SF4853 2.9 45.0 1.0
FE1 A:SF4853 2.9 45.0 1.0
FE4 A:SF4853 2.9 45.0 1.0
SG A:CYS582 3.1 34.5 1.0
CB A:CYS582 3.2 34.5 1.0
CA A:CYS582 3.3 34.5 1.0
S2 A:SF4853 3.6 45.0 1.0
N A:CYS582 3.7 34.5 1.0
CB A:CYS573 3.8 34.0 1.0
C A:THR581 4.3 34.4 1.0
SG A:CYS573 4.4 34.0 1.0
O A:GLY575 4.4 36.7 1.0
O A:THR581 4.6 34.4 1.0
CD1 B:ILE702 4.6 29.8 1.0
C A:CYS582 4.7 34.5 1.0
C A:GLY575 4.8 36.7 1.0
N A:THR581 4.9 34.4 1.0

Iron binding site 3 out of 12 in 5zji

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Iron binding site 3 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:45.0
occ:1.00
 FE3 A:SF4853 0.0 45.0 1.0
S4 A:SF4853 2.0 45.0 1.0
S2 A:SF4853 2.1 45.0 1.0
S1 A:SF4853 2.1 45.0 1.0
FE1 A:SF4853 2.9 45.0 1.0
FE2 A:SF4853 2.9 45.0 1.0
FE4 A:SF4853 2.9 45.0 1.0
SG B:CYS568 3.0 32.8 1.0
S3 A:SF4853 3.6 45.0 1.0
CB B:CYS568 3.8 32.8 1.0
CZ3 B:TRP667 4.0 33.5 1.0
CA B:CYS568 4.2 32.8 1.0
CE3 B:TRP667 4.3 33.5 1.0
SG A:CYS582 4.8 34.5 1.0
N B:CYS568 4.8 32.8 1.0
NH2 A:ARG723 4.9 30.0 1.0
CB B:CYS559 4.9 35.1 1.0
CH2 B:TRP667 4.9 33.5 1.0
CB A:CYS582 4.9 34.5 1.0
NH2 B:ARG706 4.9 29.9 1.0

Iron binding site 4 out of 12 in 5zji

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Iron binding site 4 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe853

b:45.0
occ:1.00
 FE4 A:SF4853 0.0 45.0 1.0
S1 A:SF4853 2.1 45.0 1.0
S2 A:SF4853 2.1 45.0 1.0
S3 A:SF4853 2.1 45.0 1.0
FE2 A:SF4853 2.9 45.0 1.0
FE3 A:SF4853 2.9 45.0 1.0
FE1 A:SF4853 2.9 45.0 1.0
SG A:CYS573 3.1 34.0 1.0
S4 A:SF4853 3.6 45.0 1.0
CB A:CYS573 3.8 34.0 1.0
SG B:CYS568 4.4 32.8 1.0
N B:PRO562 4.5 36.1 1.0
CA B:PRO562 4.6 36.1 1.0
C B:GLY561 4.7 35.1 1.0
O B:GLY561 4.7 35.1 1.0
CB B:PRO562 4.8 36.1 1.0
CD B:PRO562 4.9 36.1 1.0

Iron binding site 5 out of 12 in 5zji

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Iron binding site 5 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.9
occ:1.00
 FE1 C:SF4101 0.0 48.9 1.0
S3 C:SF4101 2.0 48.9 1.0
S2 C:SF4101 2.0 48.9 1.0
S4 C:SF4101 2.1 48.9 1.0
FE3 C:SF4101 2.9 48.9 1.0
FE2 C:SF4101 2.9 48.9 1.0
FE4 C:SF4101 2.9 48.9 1.0
SG C:CYS54 3.1 41.6 1.0
CB C:CYS54 3.2 41.6 1.0
S1 C:SF4101 3.6 48.9 1.0
CG2 C:VAL67 4.0 38.6 1.0
N C:CYS54 4.1 41.6 1.0
CA C:CYS54 4.3 41.6 1.0
CD1 C:LEU26 4.5 44.4 1.0
N C:LYS52 4.7 38.1 1.0
CA C:LYS52 4.8 38.1 1.0
N C:ARG53 4.9 38.4 1.0
CG2 C:VAL5 5.0 40.4 1.0

Iron binding site 6 out of 12 in 5zji

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Iron binding site 6 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.9
occ:1.00
 FE2 C:SF4101 0.0 48.9 1.0
S3 C:SF4101 2.0 48.9 1.0
S4 C:SF4101 2.1 48.9 1.0
S1 C:SF4101 2.1 48.9 1.0
N C:CYS51 2.9 40.6 1.0
FE1 C:SF4101 2.9 48.9 1.0
N C:LYS52 2.9 38.1 1.0
FE4 C:SF4101 2.9 48.9 1.0
FE3 C:SF4101 2.9 48.9 1.0
SG C:CYS51 3.1 40.6 1.0
C C:GLY50 3.5 40.2 1.0
CA C:CYS51 3.6 40.6 1.0
C C:CYS51 3.6 40.6 1.0
S2 C:SF4101 3.6 48.9 1.0
N C:GLY50 3.8 40.2 1.0
CA C:LYS52 3.9 38.1 1.0
CA C:GLY50 3.9 40.2 1.0
CB C:CYS51 3.9 40.6 1.0
N C:ARG53 4.0 38.4 1.0
O C:GLY50 4.3 40.2 1.0
C C:LYS52 4.5 38.1 1.0
CG2 C:VAL49 4.6 41.5 1.0
O C:CYS51 4.6 40.6 1.0
CD C:PRO22 4.9 43.8 1.0
C C:VAL49 4.9 41.5 1.0
SG C:CYS48 4.9 43.5 1.0
N C:CYS54 4.9 41.6 1.0

Iron binding site 7 out of 12 in 5zji

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Iron binding site 7 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.9
occ:1.00
 FE3 C:SF4101 0.0 48.9 1.0
S1 C:SF4101 2.1 48.9 1.0
S2 C:SF4101 2.1 48.9 1.0
S4 C:SF4101 2.1 48.9 1.0
FE1 C:SF4101 2.9 48.9 1.0
FE2 C:SF4101 2.9 48.9 1.0
FE4 C:SF4101 2.9 48.9 1.0
SG C:CYS21 3.1 44.4 1.0
CD C:PRO22 3.2 43.8 1.0
CA C:CYS21 3.3 44.4 1.0
CB C:CYS21 3.3 44.4 1.0
S3 C:SF4101 3.6 48.9 1.0
N C:PRO22 3.9 43.8 1.0
C C:CYS21 4.1 44.4 1.0
SG C:CYS51 4.3 40.6 1.0
CG C:PRO22 4.3 43.8 1.0
N C:CYS21 4.4 44.4 1.0
OG1 C:THR23 4.5 44.3 1.0
CB C:CYS54 4.7 41.6 1.0
O C:ALA20 4.8 43.3 1.0
N C:CYS54 4.8 41.6 1.0
N C:THR23 4.9 44.3 1.0
C C:ALA20 5.0 43.3 1.0

Iron binding site 8 out of 12 in 5zji

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Iron binding site 8 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.9
occ:1.00
 FE4 C:SF4101 0.0 48.9 1.0
S1 C:SF4101 2.1 48.9 1.0
S2 C:SF4101 2.1 48.9 1.0
S3 C:SF4101 2.1 48.9 1.0
FE2 C:SF4101 2.9 48.9 1.0
FE1 C:SF4101 2.9 48.9 1.0
FE3 C:SF4101 2.9 48.9 1.0
SG C:CYS48 3.1 43.5 1.0
S4 C:SF4101 3.6 48.9 1.0
CG2 C:VAL25 3.7 44.6 1.0
CB C:CYS48 3.9 43.5 1.0
CA C:CYS48 3.9 43.5 1.0
CB C:VAL25 4.0 44.6 1.0
N C:GLY50 4.1 40.2 1.0
N C:VAL49 4.2 41.5 1.0
OG1 C:THR23 4.3 44.3 1.0
CG1 C:VAL25 4.4 44.6 1.0
C C:CYS48 4.5 43.5 1.0
SG C:CYS21 4.7 44.4 1.0
CA C:GLY50 4.7 40.2 1.0
CG2 C:VAL5 4.7 40.4 1.0

Iron binding site 9 out of 12 in 5zji

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Iron binding site 9 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:52.7
occ:1.00
 FE1 C:SF4102 0.0 52.7 1.0
S3 C:SF4102 2.1 52.7 1.0
S4 C:SF4102 2.1 52.7 1.0
S2 C:SF4102 2.1 52.7 1.0
FE4 C:SF4102 2.9 52.7 1.0
FE3 C:SF4102 2.9 52.7 1.0
FE2 C:SF4102 2.9 52.7 1.0
SG C:CYS58 3.2 44.3 1.0
CB C:CYS58 3.4 44.3 1.0
S1 C:SF4102 3.6 52.7 1.0
CA C:CYS58 3.9 44.3 1.0
CG1 C:VAL65 4.0 39.4 1.0
CB C:SER64 4.0 41.6 1.0
N C:VAL65 4.2 39.4 1.0
SG C:CYS17 4.3 44.1 1.0
CB C:CYS17 4.4 44.1 1.0
CB C:VAL65 4.4 39.4 1.0
OG C:SER64 4.7 41.6 1.0
CD C:PRO59 4.8 44.4 1.0
C C:CYS58 4.9 44.3 1.0
CA C:SER64 4.9 41.6 1.0
N C:CYS58 4.9 44.3 1.0
N C:SER64 4.9 41.6 1.0
C C:SER64 4.9 41.6 1.0

Iron binding site 10 out of 12 in 5zji

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Iron binding site 10 out of 12 in the Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Photosystem I Supercomplex with Light-Harvesting Complexes I and II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:52.7
occ:1.00
 FE2 C:SF4102 0.0 52.7 1.0
S1 C:SF4102 2.1 52.7 1.0
S4 C:SF4102 2.1 52.7 1.0
S3 C:SF4102 2.1 52.7 1.0
FE4 C:SF4102 2.9 52.7 1.0
FE3 C:SF4102 2.9 52.7 1.0
FE1 C:SF4102 2.9 52.7 1.0
SG C:CYS17 3.1 44.1 1.0
S2 C:SF4102 3.6 52.7 1.0
N C:CYS17 3.6 44.1 1.0
N C:GLN16 3.8 44.6 1.0
CB C:CYS17 3.8 44.1 1.0
N C:THR15 4.2 45.9 1.0
CA C:THR15 4.3 45.9 1.0
CA C:CYS17 4.4 44.1 1.0
C C:THR15 4.5 45.9 1.0
CA C:GLN16 4.6 44.6 1.0
C C:GLN16 4.6 44.6 1.0
N C:CYS14 4.7 47.3 1.0
SG C:CYS11 4.8 45.2 1.0
CB C:ALA40 4.8 44.6 1.0
CB C:GLN16 4.8 44.6 1.0
C C:CYS14 4.9 47.3 1.0
SD C:MET28 4.9 47.0 1.0
N C:VAL18 4.9 43.6 1.0

Reference:

X.Pan, J.Ma, X.Su, P.Cao, W.Chang, Z.Liu, X.Zhang, M.Li. Structure of the Maize Photosystem I Supercomplex with Light-Harvesting Complexes I and II. Science V. 360 1109 2018.
ISSN: ESSN 1095-9203
PubMed: 29880686
DOI: 10.1126/SCIENCE.AAT1156
Page generated: Tue Aug 6 13:11:43 2024

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