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Iron in PDB 5zta: Sirb From Bacillus Subtilis with FE3+

Enzymatic activity of Sirb From Bacillus Subtilis with FE3+

All present enzymatic activity of Sirb From Bacillus Subtilis with FE3+:
4.99.1.4;

Protein crystallography data

The structure of Sirb From Bacillus Subtilis with FE3+, PDB code: 5zta was solved by T.Fujishiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.75 / 3.07
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.460, 53.430, 79.860, 90.00, 105.80, 90.00
R / Rfree (%) 23.5 / 26.7

Iron Binding Sites:

The binding sites of Iron atom in the Sirb From Bacillus Subtilis with FE3+ (pdb code 5zta). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Sirb From Bacillus Subtilis with FE3+, PDB code: 5zta:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5zta

Go back to Iron Binding Sites List in 5zta
Iron binding site 1 out of 2 in the Sirb From Bacillus Subtilis with FE3+


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sirb From Bacillus Subtilis with FE3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:63.4
occ:1.00
O A:HOH406 2.3 21.3 1.0
NE2 A:HIS115 2.3 75.3 1.0
NE2 A:HIS229 2.3 76.1 1.0
O A:HOH408 2.6 78.1 1.0
CE1 A:HIS115 2.9 76.8 1.0
CE1 A:HIS229 2.9 77.4 1.0
CD2 A:HIS115 3.4 74.0 1.0
CD2 A:HIS229 3.5 74.5 1.0
O A:HOH409 3.6 40.9 1.0
ND1 A:HIS115 4.1 74.6 1.0
ND1 A:HIS229 4.2 75.3 1.0
CG A:HIS115 4.4 70.6 1.0
CG A:HIS229 4.5 74.1 1.0
CD A:LYS111 4.9 75.6 1.0

Iron binding site 2 out of 2 in 5zta

Go back to Iron Binding Sites List in 5zta
Iron binding site 2 out of 2 in the Sirb From Bacillus Subtilis with FE3+


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Sirb From Bacillus Subtilis with FE3+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe301

b:1.0
occ:1.00
NE2 B:HIS115 2.5 84.2 1.0
NE2 B:HIS229 2.6 84.5 1.0
CE1 B:HIS229 3.1 83.5 1.0
CE1 B:HIS115 3.3 86.2 1.0
CD2 B:HIS115 3.5 82.9 1.0
CD2 B:HIS229 3.8 81.5 1.0
O A:GLY121 3.9 67.3 1.0
CA A:GLY121 4.4 69.2 1.0
ND1 B:HIS229 4.4 78.8 1.0
ND1 B:HIS115 4.4 85.3 1.0
CG B:HIS115 4.5 81.7 1.0
C A:GLY121 4.6 68.8 1.0
CG B:HIS229 4.8 76.9 1.0
O A:ILE120 4.9 67.9 1.0

Reference:

T.Fujishiro, T.Fujishiro. N/A N/A.
Page generated: Sun Dec 13 16:19:39 2020

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