Iron in PDB 5ztb: Structure of Sulfurtransferase

All present enzymatic activity of Structure of Sulfurtransferase:
2.8.1.15;

The structure of Structure of Sulfurtransferase, PDB code: 5ztb was solved by Y.Tanaka, M.Chen, S.Narai, M.Yao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.90 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	165.622, 82.770, 138.495, 90.00, 115.86, 90.00
R / Rfree (%)	21.6 / 24.1

The structure of Structure of Sulfurtransferase also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Sulfurtransferase (pdb code 5ztb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Sulfurtransferase, PDB code: 5ztb:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:40.2 occ:1.00 FE1 B:SF4401 0.0 40.2 1.0 S3 B:SF4401 2.1 42.8 1.0 S2 B:SF4401 2.1 57.2 1.0 S4 B:SF4401 2.1 42.3 1.0 SG B:CYS222 2.7 50.6 1.0 FE4 B:SF4401 3.0 42.3 1.0 FE2 B:SF4401 3.0 49.8 1.0 FE3 B:SF4401 3.0 38.9 1.0 CB B:CYS222 3.1 37.8 1.0 S1 B:SF4401 3.7 41.4 1.0 CB B:ASN224 3.7 29.9 1.0 CD1 B:ILE83 4.0 30.2 1.0 ND2 B:ASN224 4.1 32.3 1.0 CG B:ASN224 4.4 38.4 1.0 CA B:ASN224 4.5 32.9 1.0 OXT E:GLY65 4.6 45.2 1.0 N B:ASN224 4.6 29.3 1.0 CA B:CYS222 4.6 31.9 1.0 N B:ALA225 4.7 33.1 1.0 C B:ASN224 4.7 37.2 1.0 C B:CYS222 5.0 29.9 1.0

Iron binding site 2 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:49.8 occ:1.00 FE2 B:SF4401 0.0 49.8 1.0 S4 B:SF4401 2.1 42.3 1.0 S1 B:SF4401 2.1 41.4 1.0 S3 B:SF4401 2.1 42.8 1.0 SG B:CYS130 2.7 47.7 1.0 FE1 B:SF4401 3.0 40.2 1.0 FE4 B:SF4401 3.0 42.3 1.0 FE3 B:SF4401 3.0 38.9 1.0 CB B:CYS130 3.2 42.3 1.0 CA B:CYS130 3.4 32.0 1.0 S2 B:SF4401 3.7 57.2 1.0 N B:CYS130 4.0 32.8 1.0 CB B:ASN224 4.0 29.9 1.0 O E:GLY65 4.3 69.7 1.0 O B:ASN224 4.6 29.4 1.0 C B:CYS130 4.7 28.6 1.0 C B:ALA129 4.7 32.6 1.0 C B:ASN224 4.7 37.2 1.0 O B:CYS130 4.9 26.4 1.0 CB B:CYS133 5.0 20.3 1.0 O B:HOH534 5.0 39.5 1.0 ND2 B:ASN224 5.0 32.3 1.0

Iron binding site 3 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:38.9 occ:1.00 FE3 B:SF4401 0.0 38.9 1.0 S4 B:SF4401 2.1 42.3 1.0 S1 B:SF4401 2.1 41.4 1.0 S2 B:SF4401 2.1 57.2 1.0 O E:GLY65 2.4 69.7 1.0 OXT E:GLY65 2.5 45.2 1.0 C E:GLY65 2.8 50.3 1.0 FE4 B:SF4401 3.0 42.3 1.0 FE1 B:SF4401 3.0 40.2 1.0 FE2 B:SF4401 3.0 49.8 1.0 O B:HOH505 3.7 46.6 1.0 S3 B:SF4401 3.7 42.8 1.0 O E:HOH202 3.7 54.9 1.0 O2A B:ATP404 4.2 53.8 1.0 CA E:GLY65 4.3 53.0 1.0 CB B:CYS222 4.9 37.8 1.0

Iron binding site 4 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:42.3 occ:1.00 FE4 B:SF4401 0.0 42.3 1.0 S3 B:SF4401 2.1 42.8 1.0 S2 B:SF4401 2.1 57.2 1.0 S1 B:SF4401 2.1 41.4 1.0 SG B:CYS133 2.7 36.8 1.0 FE1 B:SF4401 3.0 40.2 1.0 FE3 B:SF4401 3.0 38.9 1.0 FE2 B:SF4401 3.0 49.8 1.0 CB B:CYS133 3.1 20.3 1.0 S4 B:SF4401 3.7 42.3 1.0 CD1 B:ILE83 4.5 30.2 1.0 O B:HOH505 4.5 46.6 1.0 CA B:CYS133 4.5 34.0 1.0 CD1 B:LEU81 4.5 32.1 1.0 CA B:CYS130 4.6 32.0 1.0 C B:CYS133 4.9 25.4 1.0

Iron binding site 5 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:52.4 occ:0.92 FE1 A:SF4401 0.0 52.4 0.9 S4 A:SF4401 2.1 60.4 0.9 S3 A:SF4401 2.1 51.6 0.9 S2 A:SF4401 2.1 51.2 0.9 SG A:CYS222 2.3 54.8 1.0 FE4 A:SF4401 3.0 46.4 0.9 FE3 A:SF4401 3.0 52.8 0.9 FE2 A:SF4401 3.0 51.9 0.9 CB A:CYS222 3.2 49.5 1.0 S1 A:SF4401 3.7 54.6 0.9 CB A:ASN224 3.9 53.7 1.0 CD1 A:ILE83 4.0 42.7 1.0 ND2 A:ASN224 4.2 50.2 1.0 O D:GLY65 4.5 61.8 1.0 CG A:ASN224 4.5 60.8 1.0 N A:ASN224 4.6 51.1 1.0 CA A:CYS222 4.7 59.2 1.0 CA A:ASN224 4.7 57.5 1.0 N A:ALA225 4.8 61.1 1.0 C A:ASN224 4.8 59.7 1.0

Iron binding site 6 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:51.9 occ:0.92 FE2 A:SF4401 0.0 51.9 0.9 S4 A:SF4401 2.1 60.4 0.9 S3 A:SF4401 2.1 51.6 0.9 S1 A:SF4401 2.1 54.6 0.9 SG A:CYS130 2.3 51.6 1.0 FE3 A:SF4401 3.0 52.8 0.9 FE1 A:SF4401 3.0 52.4 0.9 FE4 A:SF4401 3.0 46.4 0.9 CB A:CYS130 3.1 44.3 1.0 CA A:CYS130 3.4 45.1 1.0 S2 A:SF4401 3.7 51.2 0.9 CB A:ASN224 4.0 53.7 1.0 N A:CYS130 4.1 48.8 1.0 OXT D:GLY65 4.5 84.3 1.0 C A:CYS130 4.6 44.2 1.0 O A:ASN224 4.7 55.2 1.0 C A:ASN224 4.8 59.7 1.0 O A:CYS130 4.8 46.0 1.0 ND2 A:ASN224 4.8 50.2 1.0 C A:ALA129 4.8 49.0 1.0 CB A:CYS133 4.8 41.3 1.0 CG A:ASN224 5.0 60.8 1.0

Iron binding site 7 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:52.8 occ:0.92 FE3 A:SF4401 0.0 52.8 0.9 S1 A:SF4401 2.1 54.6 0.9 S4 A:SF4401 2.1 60.4 0.9 S2 A:SF4401 2.1 51.2 0.9 O D:GLY65 2.4 61.8 1.0 OXT D:GLY65 2.4 84.3 1.0 C D:GLY65 2.8 73.5 1.0 FE2 A:SF4401 3.0 51.9 0.9 FE1 A:SF4401 3.0 52.4 0.9 FE4 A:SF4401 3.0 46.4 0.9 S3 A:SF4401 3.7 51.6 0.9 O2A A:ATP404 4.0 77.1 1.0 CA D:GLY65 4.3 74.6 1.0 CB A:CYS222 4.9 49.5 1.0 SG A:CYS222 4.9 54.8 1.0 SG A:CYS130 5.0 51.6 1.0

Iron binding site 8 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:46.4 occ:0.92 FE4 A:SF4401 0.0 46.4 0.9 S2 A:SF4401 2.1 51.2 0.9 S1 A:SF4401 2.1 54.6 0.9 S3 A:SF4401 2.1 51.6 0.9 SG A:CYS133 2.3 46.9 1.0 CB A:CYS133 3.0 41.3 1.0 FE1 A:SF4401 3.0 52.4 0.9 FE3 A:SF4401 3.0 52.8 0.9 FE2 A:SF4401 3.0 51.9 0.9 S4 A:SF4401 3.7 60.4 0.9 CA A:CYS133 4.4 47.4 1.0 CD1 A:ILE83 4.5 42.7 1.0 CD1 A:LEU81 4.5 41.4 1.0 CA A:CYS130 4.7 45.1 1.0 C A:CYS133 4.7 53.9 1.0

Iron binding site 9 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:71.4 occ:0.90 FE1 C:SF4401 0.0 71.4 0.9 S2 C:SF4401 2.1 70.2 0.9 S3 C:SF4401 2.1 71.4 0.9 S4 C:SF4401 2.1 73.2 0.9 SG C:CYS222 2.3 79.8 1.0 FE4 C:SF4401 3.0 66.9 0.9 FE3 C:SF4401 3.0 74.2 0.9 FE2 C:SF4401 3.0 76.5 0.9 CB C:CYS222 3.2 84.1 1.0 S1 C:SF4401 3.7 75.0 0.9 CB C:ASN224 4.0 78.5 1.0 ND2 C:ASN224 4.0 81.0 1.0 CD1 C:ILE83 4.1 77.2 1.0 CG C:ASN224 4.4 82.8 1.0 OXT F:GLY65 4.4 0.4 1.0 CA C:CYS222 4.6 86.7 1.0 N C:ASN224 4.7 82.3 1.0 CA C:ASN224 4.7 82.4 1.0 N C:ALA225 4.9 84.6 1.0 C C:ASN224 5.0 87.3 1.0 SG C:CYS133 5.0 0.7 1.0 C C:CYS222 5.0 94.2 1.0

Iron binding site 10 out of 12 in the Structure of Sulfurtransferase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Sulfurtransferase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:76.5 occ:0.90 FE2 C:SF4401 0.0 76.5 0.9 S4 C:SF4401 2.1 73.2 0.9 S1 C:SF4401 2.1 75.0 0.9 S3 C:SF4401 2.1 71.4 0.9 SG C:CYS130 2.3 73.2 1.0 FE3 C:SF4401 3.0 74.2 0.9 FE1 C:SF4401 3.0 71.4 0.9 FE4 C:SF4401 3.0 66.9 0.9 CB C:CYS130 3.2 73.6 1.0 CA C:CYS130 3.5 77.7 1.0 S2 C:SF4401 3.7 70.2 0.9 CB C:ASN224 3.9 78.5 1.0 N C:CYS130 4.3 87.4 1.0 O F:GLY65 4.5 0.9 1.0 ND2 C:ASN224 4.5 81.0 1.0 O C:ASN224 4.6 90.2 1.0 C C:ASN224 4.6 87.3 1.0 C C:CYS130 4.7 77.5 1.0 CG C:ASN224 4.8 82.8 1.0 OXT F:GLY65 4.8 0.4 1.0 O C:CYS130 4.8 71.8 1.0 CA C:ASN224 4.9 82.4 1.0 C C:ALA129 4.9 84.7 1.0 CB C:CYS133 4.9 74.6 1.0 O C:ALA129 5.0 77.5 1.0

Y.Tanaka, M.Chen, S.Narai, M.Yao. Structure of Sulfurtransferase To Be Published.