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Iron in PDB 6a3k: Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705

Protein crystallography data

The structure of Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705, PDB code: 6a3k was solved by A.Suka, H.Oki, Y.Kato, K.Kawahara, T.Ohkubo, T.Maruno, Y.Kobayashi, S.Fujii, S.Wakai, Y.Sambongi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.26 / 1.71
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.672, 52.470, 50.929, 90.00, 132.85, 90.00
R / Rfree (%) 16.6 / 19.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705 (pdb code 6a3k). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705, PDB code: 6a3k:

Iron binding site 1 out of 1 in 6a3k

Go back to Iron Binding Sites List in 6a3k
Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome C' From Shewanella Benthica DB6705 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:14.5
occ:1.00
FE A:HEC201 0.0 14.5 1.0
NC A:HEC201 2.1 13.2 1.0
NA A:HEC201 2.1 12.2 1.0
NB A:HEC201 2.1 12.1 1.0
ND A:HEC201 2.1 14.3 1.0
NE2 A:HIS123 2.1 11.2 1.0
C4A A:HEC201 3.1 11.8 1.0
C4C A:HEC201 3.1 12.2 1.0
C1B A:HEC201 3.1 13.7 1.0
C1D A:HEC201 3.1 11.1 1.0
C1C A:HEC201 3.1 10.8 1.0
C4B A:HEC201 3.1 13.2 1.0
C1A A:HEC201 3.1 10.9 1.0
CD2 A:HIS123 3.1 13.8 1.0
C4D A:HEC201 3.1 12.0 1.0
CE1 A:HIS123 3.1 15.8 1.0
CD1 A:PHE17 3.4 10.8 1.0
CHB A:HEC201 3.4 11.5 1.0
CHD A:HEC201 3.4 11.5 1.0
CHC A:HEC201 3.5 10.3 1.0
CE1 A:PHE17 3.5 11.9 1.0
CHA A:HEC201 3.5 10.5 1.0
CG A:PHE17 3.8 10.4 1.0
CZ A:PHE17 4.0 14.2 1.0
CD2 A:PHE17 4.2 10.3 1.0
ND1 A:HIS123 4.2 16.9 1.0
CG A:HIS123 4.3 13.3 1.0
C3A A:HEC201 4.3 12.7 1.0
C2B A:HEC201 4.3 12.3 1.0
C3C A:HEC201 4.3 13.7 1.0
C2C A:HEC201 4.3 13.1 1.0
C2A A:HEC201 4.3 11.1 1.0
CE2 A:PHE17 4.3 11.6 1.0
C2D A:HEC201 4.3 12.2 1.0
C3B A:HEC201 4.3 11.0 1.0
C3D A:HEC201 4.3 11.6 1.0
CB A:PHE17 4.5 11.7 1.0

Reference:

A.Suka, H.Oki, Y.Kato, K.Kawahara, T.Ohkubo, T.Maruno, Y.Kobayashi, S.Fujii, S.Wakai, L.Lisdiana, Y.Sambongi. Stability of Cytochromes C' From Psychrophilic and Piezophilic Shewanella Species: Implications For Complex Multiple Adaptation to Low Temperature and High Hydrostatic Pressure. Extremophiles V. 23 239 2019.
ISSN: ESSN 1433-4909
PubMed: 30689055
DOI: 10.1007/S00792-019-01077-9
Page generated: Tue Aug 6 13:25:24 2024

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