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Iron in PDB 6a52: Oxidase Chap-H1

Protein crystallography data

The structure of Oxidase Chap-H1, PDB code: 6a52 was solved by B.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.30 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.610, 49.940, 59.330, 90.00, 96.79, 90.00
R / Rfree (%) 19.4 / 25

Iron Binding Sites:

The binding sites of Iron atom in the Oxidase Chap-H1 (pdb code 6a52). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Oxidase Chap-H1, PDB code: 6a52:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6a52

Go back to Iron Binding Sites List in 6a52
Iron binding site 1 out of 2 in the Oxidase Chap-H1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Oxidase Chap-H1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:17.9
occ:1.00
NE2 A:HIS61 2.1 14.4 1.0
OE1 A:GLU117 2.1 19.6 1.0
NE2 B:HIS7 2.1 21.0 1.0
O A:HOH381 2.9 28.0 1.0
O A:HOH350 2.9 22.4 1.0
CE1 A:HIS61 3.0 20.9 1.0
CD2 A:HIS61 3.1 19.5 1.0
CE1 B:HIS7 3.1 18.8 1.0
CD2 B:HIS7 3.1 18.0 1.0
CD A:GLU117 3.1 23.2 1.0
OE2 A:GLU117 3.5 21.4 1.0
O A:HOH309 3.6 29.9 1.0
CB A:ALA63 3.8 16.3 1.0
OH A:TYR107 4.1 21.7 1.0
CE2 A:TYR107 4.1 17.9 1.0
ND1 A:HIS61 4.1 16.6 1.0
CG A:HIS61 4.2 17.5 1.0
ND1 B:HIS7 4.2 19.2 1.0
CG B:HIS7 4.3 17.2 1.0
CG A:GLU117 4.4 14.7 1.0
O A:HOH390 4.5 17.0 1.0
CZ A:TYR107 4.6 18.9 1.0
CB A:GLU117 4.6 17.0 1.0

Iron binding site 2 out of 2 in 6a52

Go back to Iron Binding Sites List in 6a52
Iron binding site 2 out of 2 in the Oxidase Chap-H1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Oxidase Chap-H1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:46.8
occ:1.00
O B:HOH305 2.0 38.8 1.0
OE1 B:GLU117 2.2 27.0 1.0
CE1 B:HIS61 2.4 29.6 1.0
NE2 A:HIS7 2.5 26.4 1.0
O A:HOH382 2.7 32.8 1.0
NE2 B:HIS61 3.1 30.4 1.0
CD B:GLU117 3.1 30.1 1.0
O B:HOH386 3.2 33.9 1.0
OE2 B:GLU117 3.3 28.9 1.0
CE1 A:HIS7 3.4 26.3 1.0
ND1 B:HIS61 3.5 29.0 1.0
CD2 A:HIS7 3.6 22.6 1.0
OH B:TYR107 3.9 36.2 1.0
CB B:ALA63 4.0 20.8 1.0
CE2 B:TYR107 4.4 26.6 1.0
CD2 B:HIS61 4.4 27.1 1.0
ND1 A:HIS7 4.5 20.8 1.0
CG B:GLU117 4.6 27.0 1.0
CZ B:TYR107 4.6 30.6 1.0
O B:HOH385 4.6 41.9 1.0
CG B:HIS61 4.6 27.7 1.0
CG A:HIS7 4.7 25.6 1.0
CB B:GLU117 4.9 21.6 1.0

Reference:

Y.S.Wang, B.Zhang, J.Zhu, C.L.Yang, Y.Guo, C.L.Liu, F.Liu, H.Huang, S.Zhao, Y.Liang, R.H.Jiao, R.X.Tan, H.M.Ge. Molecular Basis For the Final Oxidative Rearrangement Steps in Chartreusin Biosynthesis. J. Am. Chem. Soc. V. 140 10909 2018.
ISSN: ESSN 1520-5126
PubMed: 30067334
DOI: 10.1021/JACS.8B06623
Page generated: Sun Dec 13 16:19:58 2020

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