Iron in PDB 6adq: Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis

All present enzymatic activity of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis:
1.10.2.2; 1.15.1.1; 1.9.3.1;

The structure of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis also contains other interesting chemical elements:

Copper

(Cu)

8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis (pdb code 6adq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis, PDB code: 6adq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe601 b:27.5 occ:1.00 FE F:HEA601 0.0 27.5 1.0 NC F:HEA601 1.8 27.5 1.0 ND F:HEA601 1.9 27.5 1.0 NA F:HEA601 1.9 27.5 1.0 NB F:HEA601 2.0 27.5 1.0 NE2 F:HIS397 2.7 22.7 1.0 C1C F:HEA601 2.9 27.5 1.0 C4C F:HEA601 2.9 27.5 1.0 C4A F:HEA601 3.0 27.5 1.0 C4D F:HEA601 3.0 27.5 1.0 C1D F:HEA601 3.0 27.5 1.0 C1A F:HEA601 3.0 27.5 1.0 C1B F:HEA601 3.1 27.5 1.0 C4B F:HEA601 3.1 27.5 1.0 CD2 F:HIS397 3.2 22.7 1.0 CHA F:HEA601 3.8 27.5 1.0 CHB F:HEA601 3.8 27.5 1.0 CHD F:HEA601 3.8 27.5 1.0 CHC F:HEA601 3.8 27.5 1.0 CE1 F:HIS397 3.9 22.7 1.0 C3C F:HEA601 4.2 27.5 1.0 C2C F:HEA601 4.2 27.5 1.0 C3A F:HEA601 4.2 27.5 1.0 C2D F:HEA601 4.2 27.5 1.0 C2A F:HEA601 4.3 27.5 1.0 C3D F:HEA601 4.3 27.5 1.0 C2B F:HEA601 4.4 27.5 1.0 C3B F:HEA601 4.4 27.5 1.0 CG F:HIS397 4.5 22.7 1.0 CU F:CU603 4.7 35.4 1.0 ND1 F:HIS397 4.8 22.7 1.0 CB F:PHE398 5.0 23.0 1.0

Iron binding site 2 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe602 b:25.2 occ:1.00 FE F:HEA602 0.0 25.2 1.0 NC F:HEA602 1.8 25.2 1.0 ND F:HEA602 1.8 25.2 1.0 NA F:HEA602 1.9 25.2 1.0 NB F:HEA602 1.9 25.2 1.0 NE2 F:HIS86 2.6 24.1 1.0 C1C F:HEA602 2.8 25.2 1.0 C4D F:HEA602 2.8 25.2 1.0 NE2 F:HIS399 2.8 23.0 1.0 C1A F:HEA602 2.9 25.2 1.0 C4C F:HEA602 2.9 25.2 1.0 C4A F:HEA602 2.9 25.2 1.0 C1D F:HEA602 3.0 25.2 1.0 C4B F:HEA602 3.0 25.2 1.0 CD2 F:HIS86 3.0 24.1 1.0 C1B F:HEA602 3.0 25.2 1.0 CHA F:HEA602 3.4 25.2 1.0 CHC F:HEA602 3.5 25.2 1.0 CHB F:HEA602 3.6 25.2 1.0 CD2 F:HIS399 3.7 23.0 1.0 CE1 F:HIS399 3.8 23.0 1.0 CHD F:HEA602 3.8 25.2 1.0 CE1 F:HIS86 3.8 24.1 1.0 C2C F:HEA602 4.1 25.2 1.0 C3C F:HEA602 4.1 25.2 1.0 C3D F:HEA602 4.1 25.2 1.0 C2A F:HEA602 4.1 25.2 1.0 C2D F:HEA602 4.2 25.2 1.0 C3A F:HEA602 4.2 25.2 1.0 CG F:HIS86 4.2 24.1 1.0 C3B F:HEA602 4.3 25.2 1.0 C2B F:HEA602 4.3 25.2 1.0 ND1 F:HIS86 4.6 24.1 1.0 CE F:MET62 4.8 28.0 1.0 CG F:HIS399 4.9 23.0 1.0 ND1 F:HIS399 4.9 23.0 1.0 CB F:ALA59 5.0 24.5 1.0

Iron binding site 3 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:25.2 occ:1.00 FE B:HEM601 0.0 25.2 1.0 NB B:HEM601 2.0 25.2 1.0 NC B:HEM601 2.0 25.2 1.0 ND B:HEM601 2.0 25.2 1.0 NA B:HEM601 2.0 25.2 1.0 NE2 B:HIS226 2.7 24.9 1.0 NE2 B:HIS123 2.8 24.4 1.0 CD2 B:HIS123 2.9 24.4 1.0 C1C B:HEM601 2.9 25.2 1.0 C4B B:HEM601 2.9 25.2 1.0 C1B B:HEM601 3.0 25.2 1.0 C4D B:HEM601 3.0 25.2 1.0 C4C B:HEM601 3.0 25.2 1.0 C4A B:HEM601 3.0 25.2 1.0 C1A B:HEM601 3.0 25.2 1.0 C1D B:HEM601 3.0 25.2 1.0 CE1 B:HIS226 3.2 24.9 1.0 CHC B:HEM601 3.2 25.2 1.0 CHA B:HEM601 3.4 25.2 1.0 CHB B:HEM601 3.4 25.2 1.0 CHD B:HEM601 3.4 25.2 1.0 CD2 B:HIS226 3.9 24.9 1.0 CE1 B:HIS123 3.9 24.4 1.0 CG B:HIS123 4.1 24.4 1.0 C2C B:HEM601 4.1 25.2 1.0 C3B B:HEM601 4.1 25.2 1.0 C2B B:HEM601 4.1 25.2 1.0 C3C B:HEM601 4.2 25.2 1.0 C3A B:HEM601 4.2 25.2 1.0 C2A B:HEM601 4.2 25.2 1.0 C3D B:HEM601 4.2 25.2 1.0 C2D B:HEM601 4.2 25.2 1.0 ND1 B:HIS226 4.5 24.9 1.0 ND1 B:HIS123 4.6 24.4 1.0 CG B:HIS226 4.8 24.9 1.0

Iron binding site 4 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:22.5 occ:1.00 FE B:HEM602 0.0 22.5 1.0 NC B:HEM602 1.9 22.5 1.0 NB B:HEM602 2.0 22.5 1.0 NA B:HEM602 2.1 22.5 1.0 ND B:HEM602 2.1 22.5 1.0 NE2 B:HIS109 2.7 22.5 1.0 NE2 B:HIS211 2.7 23.9 1.0 C1C B:HEM602 2.9 22.5 1.0 C4B B:HEM602 2.9 22.5 1.0 C4C B:HEM602 3.0 22.5 1.0 CE1 B:HIS211 3.0 23.9 1.0 C1B B:HEM602 3.0 22.5 1.0 C1D B:HEM602 3.1 22.5 1.0 C4D B:HEM602 3.1 22.5 1.0 C4A B:HEM602 3.1 22.5 1.0 C1A B:HEM602 3.1 22.5 1.0 CE1 B:HIS109 3.2 22.5 1.0 CHC B:HEM602 3.3 22.5 1.0 CHD B:HEM602 3.4 22.5 1.0 CHB B:HEM602 3.4 22.5 1.0 CHA B:HEM602 3.5 22.5 1.0 CD2 B:HIS211 3.8 23.9 1.0 CD2 B:HIS109 3.9 22.5 1.0 ND1 B:HIS211 4.1 23.9 1.0 C2C B:HEM602 4.1 22.5 1.0 C3C B:HEM602 4.1 22.5 1.0 C3B B:HEM602 4.2 22.5 1.0 C2B B:HEM602 4.2 22.5 1.0 C2D B:HEM602 4.2 22.5 1.0 C3D B:HEM602 4.3 22.5 1.0 OE2 B:GLU154 4.3 26.3 1.0 C3A B:HEM602 4.3 22.5 1.0 C2A B:HEM602 4.3 22.5 1.0 ND1 B:HIS109 4.5 22.5 1.0 CG B:HIS211 4.5 23.9 1.0 O B:HIS211 4.8 23.9 1.0 CG B:HIS109 4.8 22.5 1.0

Iron binding site 5 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:44.2 occ:1.00 FE C:HEC301 0.0 44.2 1.0 NC C:HEC301 2.0 44.2 1.0 NA C:HEC301 2.1 44.2 1.0 NB C:HEC301 2.1 44.2 1.0 ND C:HEC301 2.1 44.2 1.0 NE2 C:HIS91 2.8 46.5 1.0 C1D C:HEC301 2.9 44.2 1.0 C4C C:HEC301 2.9 44.2 1.0 C4A C:HEC301 3.0 44.2 1.0 C1B C:HEC301 3.0 44.2 1.0 C1A C:HEC301 3.0 44.2 1.0 C4D C:HEC301 3.1 44.2 1.0 C1C C:HEC301 3.1 44.2 1.0 C4B C:HEC301 3.1 44.2 1.0 CHD C:HEC301 3.3 44.2 1.0 CHB C:HEC301 3.4 44.2 1.0 CB C:MET122 3.4 43.2 1.0 CHA C:HEC301 3.4 44.2 1.0 CHC C:HEC301 3.5 44.2 1.0 CG C:MET122 3.6 43.2 1.0 SD C:MET122 3.6 43.2 1.0 O C:MET122 3.7 43.2 1.0 CE1 C:HIS91 3.7 46.5 1.0 CD2 C:HIS91 3.8 46.5 1.0 C2D C:HEC301 4.1 44.2 1.0 C3C C:HEC301 4.2 44.2 1.0 C2C C:HEC301 4.2 44.2 1.0 C3D C:HEC301 4.2 44.2 1.0 C C:MET122 4.2 43.2 1.0 C3A C:HEC301 4.2 44.2 1.0 C2A C:HEC301 4.2 44.2 1.0 CA C:MET122 4.2 43.2 1.0 C2B C:HEC301 4.3 44.2 1.0 C3B C:HEC301 4.3 44.2 1.0 ND1 C:HIS91 4.8 46.5 1.0 CG C:HIS91 4.9 46.5 1.0

Iron binding site 6 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe302 b:34.5 occ:1.00 FE C:HEC302 0.0 34.5 1.0 ND C:HEC302 2.0 34.5 1.0 NA C:HEC302 2.0 34.5 1.0 NC C:HEC302 2.1 34.5 1.0 NB C:HEC302 2.1 34.5 1.0 NE2 C:HIS192 2.7 32.1 1.0 C4D C:HEC302 3.0 34.5 1.0 C1B C:HEC302 3.0 34.5 1.0 C4B C:HEC302 3.0 34.5 1.0 C1D C:HEC302 3.0 34.5 1.0 C1C C:HEC302 3.0 34.5 1.0 SD C:MET229 3.0 37.8 1.0 C1A C:HEC302 3.0 34.5 1.0 C4A C:HEC302 3.1 34.5 1.0 CE1 C:HIS192 3.1 32.1 1.0 C4C C:HEC302 3.1 34.5 1.0 CHC C:HEC302 3.3 34.5 1.0 CHA C:HEC302 3.3 34.5 1.0 CHB C:HEC302 3.4 34.5 1.0 CHD C:HEC302 3.4 34.5 1.0 CE C:MET229 3.5 37.8 1.0 CD2 C:HIS192 4.0 32.1 1.0 C2B C:HEC302 4.1 34.5 1.0 C3B C:HEC302 4.1 34.5 1.0 C3D C:HEC302 4.2 34.5 1.0 C2D C:HEC302 4.2 34.5 1.0 C2C C:HEC302 4.3 34.5 1.0 CB C:MET229 4.3 37.8 1.0 C3A C:HEC302 4.3 34.5 1.0 C2A C:HEC302 4.3 34.5 1.0 C3C C:HEC302 4.3 34.5 1.0 CG C:MET229 4.3 37.8 1.0 ND1 C:HIS192 4.4 32.1 1.0 CG C:HIS192 4.9 32.1 1.0

Iron binding site 7 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:35.3 occ:1.00 FE1 A:FES501 0.0 35.3 1.0 S1 A:FES501 2.2 35.3 1.0 S2 A:FES501 2.2 35.3 1.0 ND1 A:HIS368 2.7 28.7 1.0 CE1 A:HIS348 2.8 29.0 1.0 NE2 A:HIS348 2.8 29.0 1.0 O A:HIS348 3.1 29.0 1.0 FE2 A:FES501 3.1 35.3 1.0 ND1 A:HIS348 3.4 29.0 1.0 CG A:HIS368 3.4 28.7 1.0 CD2 A:HIS348 3.5 29.0 1.0 CB A:HIS368 3.5 28.7 1.0 CE1 A:HIS368 3.7 28.7 1.0 CG A:HIS348 3.8 29.0 1.0 C A:HIS348 4.1 29.0 1.0 CB A:LEU349 4.1 28.9 1.0 SG A:CYS346 4.5 28.0 1.0 CD2 A:HIS368 4.6 28.7 1.0 N A:HIS368 4.6 28.7 1.0 CA A:HIS368 4.7 28.7 1.0 NE2 A:HIS368 4.7 28.7 1.0 SG A:CYS365 4.8 29.9 1.0 N A:LEU349 4.8 28.9 1.0 CA A:LEU349 4.9 28.9 1.0 CG2 B:ILE312 4.9 27.8 1.0 CA A:HIS348 5.0 29.0 1.0 CB A:HIS348 5.0 29.0 1.0

Iron binding site 8 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:35.3 occ:1.00 FE2 A:FES501 0.0 35.3 1.0 S1 A:FES501 2.2 35.3 1.0 S2 A:FES501 2.2 35.3 1.0 SG A:CYS365 3.1 29.9 1.0 CB A:CYS365 3.1 29.9 1.0 SG A:CYS346 3.1 28.0 1.0 FE1 A:FES501 3.1 35.3 1.0 CB A:CYS346 3.5 28.0 1.0 CB A:CYS351 3.9 27.1 1.0 O A:HIS348 4.2 29.0 1.0 O A:CYS351 4.4 27.1 1.0 CB A:CYS367 4.5 27.0 1.0 ND1 A:HIS368 4.5 28.7 1.0 CA A:CYS365 4.5 29.9 1.0 N A:HIS368 4.5 28.7 1.0 N A:CYS351 4.6 27.1 1.0 CA A:CYS351 4.6 27.1 1.0 N A:CYS367 4.7 27.0 1.0 C A:CYS351 4.8 27.1 1.0 SG A:CYS351 5.0 27.1 1.0 C A:CYS365 5.0 29.9 1.0

Iron binding site 9 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe601 b:27.4 occ:1.00 FE R:HEA601 0.0 27.4 1.0 NC R:HEA601 1.8 27.4 1.0 ND R:HEA601 1.9 27.4 1.0 NA R:HEA601 1.9 27.4 1.0 NB R:HEA601 2.0 27.4 1.0 NE2 R:HIS397 2.7 22.7 1.0 C1C R:HEA601 2.9 27.4 1.0 C4C R:HEA601 2.9 27.4 1.0 C4A R:HEA601 3.0 27.4 1.0 C4D R:HEA601 3.0 27.4 1.0 C1D R:HEA601 3.0 27.4 1.0 C1A R:HEA601 3.0 27.4 1.0 C1B R:HEA601 3.1 27.4 1.0 C4B R:HEA601 3.1 27.4 1.0 CD2 R:HIS397 3.2 22.7 1.0 CHA R:HEA601 3.8 27.4 1.0 CHB R:HEA601 3.8 27.4 1.0 CHD R:HEA601 3.8 27.4 1.0 CHC R:HEA601 3.8 27.4 1.0 CE1 R:HIS397 3.9 22.7 1.0 C3C R:HEA601 4.2 27.4 1.0 C2C R:HEA601 4.2 27.4 1.0 C3A R:HEA601 4.2 27.4 1.0 C2D R:HEA601 4.2 27.4 1.0 C2A R:HEA601 4.2 27.4 1.0 C3D R:HEA601 4.3 27.4 1.0 C2B R:HEA601 4.4 27.4 1.0 C3B R:HEA601 4.4 27.4 1.0 CG R:HIS397 4.5 22.7 1.0 CU R:CU603 4.7 33.9 1.0 ND1 R:HIS397 4.8 22.7 1.0 CB R:PHE398 5.0 23.9 1.0

Iron binding site 10 out of 16 in the Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Complex CIII2CIV2SOD2 From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe602 b:26.5 occ:1.00 FE R:HEA602 0.0 26.5 1.0 NC R:HEA602 1.8 26.5 1.0 ND R:HEA602 1.8 26.5 1.0 NA R:HEA602 1.9 26.5 1.0 NB R:HEA602 1.9 26.5 1.0 NE2 R:HIS86 2.6 25.1 1.0 C1C R:HEA602 2.8 26.5 1.0 C4D R:HEA602 2.8 26.5 1.0 NE2 R:HIS399 2.8 24.6 1.0 C1A R:HEA602 2.9 26.5 1.0 C4C R:HEA602 2.9 26.5 1.0 C4A R:HEA602 2.9 26.5 1.0 C1D R:HEA602 3.0 26.5 1.0 CD2 R:HIS86 3.0 25.1 1.0 C4B R:HEA602 3.0 26.5 1.0 C1B R:HEA602 3.0 26.5 1.0 CHA R:HEA602 3.4 26.5 1.0 CHC R:HEA602 3.5 26.5 1.0 CHB R:HEA602 3.6 26.5 1.0 CD2 R:HIS399 3.7 24.6 1.0 CE1 R:HIS399 3.8 24.6 1.0 CHD R:HEA602 3.8 26.5 1.0 CE1 R:HIS86 3.8 25.1 1.0 C2C R:HEA602 4.1 26.5 1.0 C3C R:HEA602 4.1 26.5 1.0 C3D R:HEA602 4.1 26.5 1.0 C2A R:HEA602 4.1 26.5 1.0 C2D R:HEA602 4.2 26.5 1.0 C3A R:HEA602 4.2 26.5 1.0 CG R:HIS86 4.2 25.1 1.0 C3B R:HEA602 4.3 26.5 1.0 C2B R:HEA602 4.3 26.5 1.0 ND1 R:HIS86 4.6 25.1 1.0 CE R:MET62 4.9 28.2 1.0 CG R:HIS399 4.9 24.6 1.0 ND1 R:HIS399 4.9 24.6 1.0 CB R:ALA59 4.9 25.0 1.0

H.Gong, J.Li, A.Xu, Y.Tang, W.Ji, R.Gao, S.Wang, L.Yu, C.Tian, J.Li, H.Y.Yen, S.Man Lam, G.Shui, X.Yang, Y.Sun, X.Li, M.Jia, C.Yang, B.Jiang, Z.Lou, C.V.Robinson, L.L.Wong, L.W.Guddat, F.Sun, Q.Wang, Z.Rao. An Electron Transfer Path Connects Subunits of A Mycobacterial Respiratory Supercomplex. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30361386
DOI: 10.1126/SCIENCE.AAT8923