Iron in PDB 6avj: Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
Protein crystallography data
The structure of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3, PDB code: 6avj
was solved by
C.H.Lipper,
O.Karmi,
Y.S.Sohn,
M.Darash-Yahana,
H.Lammert,
L.Song,
A.Liu,
R.Mittler,
R.Nechushtai,
J.N.Onuchic,
P.A.Jennings,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
34.24 /
1.90
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.406,
52.250,
78.951,
90.00,
108.67,
90.00
|
|
R / Rfree (%)
|
16.9 /
19.8
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
(pdb code 6avj). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3, PDB code: 6avj:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 1 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:13.8
occ:1.00
|
FE1
|
A:FES201
|
0.0
|
13.8
|
1.0
|
|
S2
|
A:FES201
|
2.2
|
11.5
|
1.0
|
|
S1
|
A:FES201
|
2.3
|
12.1
|
1.0
|
|
SG
|
A:CYS71
|
2.4
|
12.0
|
1.0
|
|
SG
|
A:CYS75
|
2.4
|
13.5
|
1.0
|
|
FE2
|
A:FES201
|
2.7
|
13.5
|
1.0
|
|
HB3
|
A:CYS75
|
3.0
|
15.9
|
1.0
|
|
HB2
|
A:CYS71
|
3.0
|
15.0
|
1.0
|
|
H
|
A:CYS75
|
3.1
|
16.4
|
1.0
|
|
CB
|
A:CYS71
|
3.2
|
12.5
|
1.0
|
|
CB
|
A:CYS75
|
3.3
|
13.2
|
1.0
|
|
H
|
A:GLY73
|
3.3
|
16.1
|
1.0
|
|
HA
|
A:CYS71
|
3.3
|
19.3
|
1.0
|
|
HD3
|
A:PRO84
|
3.4
|
19.7
|
1.0
|
|
HB3
|
A:PRO84
|
3.5
|
17.9
|
1.0
|
|
CA
|
A:CYS71
|
3.8
|
16.1
|
1.0
|
|
N
|
A:CYS75
|
3.8
|
13.7
|
1.0
|
|
H
|
A:ASP72
|
4.0
|
13.7
|
1.0
|
|
HB2
|
A:CYS75
|
4.0
|
15.9
|
1.0
|
|
HA
|
A:CYS60
|
4.0
|
11.0
|
1.0
|
|
HB3
|
A:CYS71
|
4.0
|
15.0
|
1.0
|
|
N
|
A:GLY73
|
4.1
|
13.4
|
1.0
|
|
HA2
|
A:GLY73
|
4.2
|
19.6
|
1.0
|
|
CA
|
A:CYS75
|
4.2
|
12.8
|
1.0
|
|
CD
|
A:PRO84
|
4.2
|
16.4
|
1.0
|
|
H
|
A:SER74
|
4.3
|
14.6
|
1.0
|
|
HG3
|
A:PRO84
|
4.3
|
19.3
|
1.0
|
|
CB
|
A:PRO84
|
4.3
|
14.9
|
1.0
|
|
N
|
A:ASP72
|
4.4
|
11.4
|
1.0
|
|
SG
|
A:CYS62
|
4.5
|
11.4
|
1.0
|
|
HB2
|
A:CYS60
|
4.5
|
15.9
|
1.0
|
|
N
|
A:SER74
|
4.5
|
12.2
|
1.0
|
|
CA
|
A:GLY73
|
4.5
|
16.3
|
1.0
|
|
HB2
|
A:SER65
|
4.5
|
14.2
|
1.0
|
|
C
|
A:CYS71
|
4.5
|
16.3
|
1.0
|
|
CG
|
A:PRO84
|
4.6
|
16.1
|
1.0
|
|
C
|
A:GLY73
|
4.6
|
17.4
|
1.0
|
|
N
|
A:PRO84
|
4.7
|
13.0
|
1.0
|
|
HA
|
A:SER83
|
4.7
|
14.5
|
1.0
|
|
HA
|
A:PRO84
|
4.7
|
15.7
|
1.0
|
|
SG
|
A:CYS60
|
4.7
|
9.6
|
1.0
|
|
H
|
A:VAL61
|
4.7
|
11.1
|
1.0
|
|
HA
|
A:CYS75
|
4.8
|
15.3
|
1.0
|
|
HB2
|
A:SER74
|
4.8
|
14.3
|
1.0
|
|
CA
|
A:PRO84
|
4.9
|
13.0
|
1.0
|
|
H
|
A:PHE76
|
4.9
|
14.3
|
1.0
|
|
CA
|
A:CYS60
|
4.9
|
9.1
|
1.0
|
|
CB
|
A:CYS60
|
4.9
|
13.3
|
1.0
|
|
H
|
A:CYS62
|
5.0
|
11.7
|
1.0
|
|
N
|
A:CYS71
|
5.0
|
11.0
|
1.0
|
|
C
|
A:SER74
|
5.0
|
13.5
|
1.0
|
|
Iron binding site 2 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 2 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:13.5
occ:1.00
|
FE2
|
A:FES201
|
0.0
|
13.5
|
1.0
|
|
S1
|
A:FES201
|
2.2
|
12.1
|
1.0
|
|
S2
|
A:FES201
|
2.2
|
11.5
|
1.0
|
|
SG
|
A:CYS60
|
2.4
|
9.6
|
1.0
|
|
SG
|
A:CYS62
|
2.4
|
11.4
|
1.0
|
|
FE1
|
A:FES201
|
2.7
|
13.8
|
1.0
|
|
H
|
A:CYS62
|
2.8
|
11.7
|
1.0
|
|
HA
|
A:CYS60
|
3.3
|
11.0
|
1.0
|
|
HB3
|
A:CYS75
|
3.3
|
15.9
|
1.0
|
|
CB
|
A:CYS60
|
3.4
|
13.3
|
1.0
|
|
HB2
|
A:CYS60
|
3.4
|
15.9
|
1.0
|
|
H
|
A:SER65
|
3.5
|
15.1
|
1.0
|
|
H
|
A:ARG64
|
3.6
|
11.4
|
1.0
|
|
CB
|
A:CYS62
|
3.6
|
14.4
|
1.0
|
|
HB3
|
A:CYS62
|
3.6
|
17.2
|
1.0
|
|
N
|
A:CYS62
|
3.6
|
9.7
|
1.0
|
|
HB2
|
A:SER65
|
3.7
|
14.2
|
1.0
|
|
H
|
A:VAL61
|
3.7
|
11.1
|
1.0
|
|
CA
|
A:CYS60
|
3.8
|
9.1
|
1.0
|
|
H
|
A:CYS75
|
3.8
|
16.4
|
1.0
|
|
HA
|
A:CYS71
|
3.9
|
19.3
|
1.0
|
|
H
|
A:GLY63
|
3.9
|
13.3
|
1.0
|
|
N
|
A:VAL61
|
4.0
|
9.2
|
1.0
|
|
CA
|
A:CYS62
|
4.1
|
12.3
|
1.0
|
|
CB
|
A:CYS75
|
4.2
|
13.2
|
1.0
|
|
N
|
A:SER65
|
4.2
|
12.6
|
1.0
|
|
C
|
A:CYS60
|
4.2
|
11.3
|
1.0
|
|
HB3
|
A:CYS60
|
4.2
|
15.9
|
1.0
|
|
HB2
|
A:ARG64
|
4.3
|
15.4
|
1.0
|
|
HB2
|
A:CYS71
|
4.3
|
15.0
|
1.0
|
|
N
|
A:GLY63
|
4.3
|
11.1
|
1.0
|
|
N
|
A:ARG64
|
4.4
|
9.5
|
1.0
|
|
SG
|
A:CYS75
|
4.4
|
13.5
|
1.0
|
|
HB2
|
A:SER74
|
4.4
|
14.3
|
1.0
|
|
CB
|
A:SER65
|
4.4
|
11.8
|
1.0
|
|
HB2
|
A:CYS62
|
4.5
|
17.2
|
1.0
|
|
N
|
A:CYS75
|
4.5
|
13.7
|
1.0
|
|
HB3
|
A:SER65
|
4.5
|
14.2
|
1.0
|
|
C
|
A:CYS62
|
4.6
|
12.9
|
1.0
|
|
HG22
|
A:VAL61
|
4.6
|
14.6
|
1.0
|
|
CA
|
A:CYS71
|
4.7
|
16.1
|
1.0
|
|
C
|
A:VAL61
|
4.7
|
10.8
|
1.0
|
|
SG
|
A:CYS71
|
4.8
|
12.0
|
1.0
|
|
CB
|
A:CYS71
|
4.8
|
12.5
|
1.0
|
|
H
|
A:ASP72
|
4.8
|
13.7
|
1.0
|
|
CA
|
A:SER65
|
4.8
|
14.2
|
1.0
|
|
CA
|
A:CYS75
|
4.8
|
12.8
|
1.0
|
|
HA
|
A:CYS75
|
4.8
|
15.3
|
1.0
|
|
HE22
|
A:GLN68
|
4.9
|
14.6
|
1.0
|
|
HB2
|
A:CYS75
|
4.9
|
15.9
|
1.0
|
|
HB3
|
A:PRO84
|
4.9
|
17.9
|
1.0
|
|
HA
|
A:SER65
|
4.9
|
17.0
|
1.0
|
|
CA
|
A:VAL61
|
5.0
|
10.7
|
1.0
|
|
C
|
A:ARG64
|
5.0
|
13.9
|
1.0
|
|
Iron binding site 3 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 3 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:10.8
occ:1.00
|
FE1
|
A:FES202
|
0.0
|
10.8
|
1.0
|
|
S2
|
A:FES202
|
2.2
|
10.0
|
1.0
|
|
S1
|
A:FES202
|
2.2
|
10.8
|
1.0
|
|
SG
|
A:CYS109
|
2.3
|
8.9
|
1.0
|
|
SG
|
A:CYS113
|
2.4
|
11.2
|
1.0
|
|
FE2
|
A:FES202
|
2.8
|
10.8
|
1.0
|
|
HB3
|
A:CYS113
|
3.0
|
15.8
|
1.0
|
|
H
|
A:CYS113
|
3.1
|
13.3
|
1.0
|
|
H
|
A:GLY111
|
3.2
|
10.0
|
1.0
|
|
HA
|
A:CYS109
|
3.3
|
11.5
|
1.0
|
|
CB
|
A:CYS113
|
3.3
|
13.2
|
1.0
|
|
CB
|
A:CYS109
|
3.4
|
10.2
|
1.0
|
|
HB2
|
A:CYS109
|
3.4
|
12.3
|
1.0
|
|
HD3
|
A:PRO46
|
3.4
|
14.2
|
1.0
|
|
HB3
|
A:PRO46
|
3.6
|
16.7
|
1.0
|
|
CA
|
A:CYS109
|
3.8
|
9.6
|
1.0
|
|
H
|
A:ASP110
|
3.8
|
13.0
|
1.0
|
|
N
|
A:CYS113
|
3.9
|
11.1
|
1.0
|
|
N
|
A:GLY111
|
4.0
|
8.3
|
1.0
|
|
HA
|
A:CYS98
|
4.0
|
10.9
|
1.0
|
|
HA2
|
A:GLY111
|
4.0
|
11.6
|
1.0
|
|
HG3
|
A:PRO46
|
4.0
|
14.7
|
1.0
|
|
HB2
|
A:CYS113
|
4.0
|
15.8
|
1.0
|
|
CA
|
A:CYS113
|
4.2
|
12.3
|
1.0
|
|
HB3
|
A:CYS109
|
4.2
|
12.3
|
1.0
|
|
N
|
A:ASP110
|
4.3
|
10.8
|
1.0
|
|
CD
|
A:PRO46
|
4.3
|
11.8
|
1.0
|
|
CB
|
A:PRO46
|
4.4
|
13.9
|
1.0
|
|
HB2
|
A:CYS98
|
4.4
|
10.0
|
1.0
|
|
CA
|
A:GLY111
|
4.4
|
9.7
|
1.0
|
|
C
|
A:CYS109
|
4.4
|
11.9
|
1.0
|
|
CG
|
A:PRO46
|
4.4
|
12.2
|
1.0
|
|
H
|
A:THR112
|
4.5
|
13.2
|
1.0
|
|
SG
|
A:CYS100
|
4.5
|
9.4
|
1.0
|
|
N
|
A:THR112
|
4.6
|
11.0
|
1.0
|
|
SG
|
A:CYS98
|
4.7
|
7.9
|
1.0
|
|
H
|
A:THR99
|
4.7
|
9.5
|
1.0
|
|
HB
|
A:THR103
|
4.7
|
11.7
|
1.0
|
|
C
|
A:GLY111
|
4.7
|
11.9
|
1.0
|
|
H
|
A:CYS100
|
4.8
|
11.7
|
1.0
|
|
HA
|
A:CYS113
|
4.8
|
14.7
|
1.0
|
|
CA
|
A:CYS98
|
4.8
|
9.1
|
1.0
|
|
CB
|
A:CYS98
|
4.8
|
8.4
|
1.0
|
|
N
|
A:PRO46
|
4.8
|
13.0
|
1.0
|
|
HA
|
A:PRO46
|
4.9
|
17.2
|
1.0
|
|
HB
|
A:THR112
|
5.0
|
13.4
|
1.0
|
|
Iron binding site 4 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 4 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe202
b:10.8
occ:1.00
|
FE2
|
A:FES202
|
0.0
|
10.8
|
1.0
|
|
S2
|
A:FES202
|
2.2
|
10.0
|
1.0
|
|
S1
|
A:FES202
|
2.2
|
10.8
|
1.0
|
|
SG
|
A:CYS98
|
2.3
|
7.9
|
1.0
|
|
SG
|
A:CYS100
|
2.4
|
9.4
|
1.0
|
|
FE1
|
A:FES202
|
2.8
|
10.8
|
1.0
|
|
H
|
A:CYS100
|
2.9
|
11.7
|
1.0
|
|
CB
|
A:CYS98
|
3.3
|
8.4
|
1.0
|
|
HB2
|
A:CYS98
|
3.3
|
10.0
|
1.0
|
|
HA
|
A:CYS98
|
3.4
|
10.9
|
1.0
|
|
HB3
|
A:CYS113
|
3.4
|
15.8
|
1.0
|
|
H
|
A:THR99
|
3.5
|
9.5
|
1.0
|
|
HB
|
A:THR103
|
3.6
|
11.7
|
1.0
|
|
CB
|
A:CYS100
|
3.6
|
8.8
|
1.0
|
|
N
|
A:CYS100
|
3.6
|
9.8
|
1.0
|
|
H
|
A:LYS101
|
3.6
|
12.5
|
1.0
|
|
HB3
|
A:CYS100
|
3.6
|
10.6
|
1.0
|
|
H
|
A:ALA102
|
3.7
|
12.1
|
1.0
|
|
H
|
A:THR103
|
3.8
|
16.1
|
1.0
|
|
CA
|
A:CYS98
|
3.8
|
9.1
|
1.0
|
|
H
|
A:CYS113
|
3.8
|
13.3
|
1.0
|
|
HA
|
A:CYS109
|
3.9
|
11.5
|
1.0
|
|
N
|
A:THR99
|
4.0
|
7.9
|
1.0
|
|
CA
|
A:CYS100
|
4.0
|
9.8
|
1.0
|
|
N
|
A:LYS101
|
4.1
|
10.4
|
1.0
|
|
CB
|
A:CYS113
|
4.2
|
13.2
|
1.0
|
|
HB3
|
A:CYS98
|
4.2
|
10.0
|
1.0
|
|
N
|
A:THR103
|
4.3
|
13.4
|
1.0
|
|
C
|
A:CYS98
|
4.3
|
8.5
|
1.0
|
|
HB2
|
A:CYS100
|
4.4
|
10.6
|
1.0
|
|
C
|
A:CYS100
|
4.4
|
10.4
|
1.0
|
|
HB
|
A:THR112
|
4.4
|
13.4
|
1.0
|
|
CB
|
A:THR103
|
4.4
|
9.7
|
1.0
|
|
N
|
A:ALA102
|
4.4
|
10.0
|
1.0
|
|
N
|
A:CYS113
|
4.5
|
11.1
|
1.0
|
|
SG
|
A:CYS113
|
4.5
|
11.2
|
1.0
|
|
C
|
A:THR99
|
4.6
|
13.5
|
1.0
|
|
HA
|
A:THR103
|
4.7
|
16.1
|
1.0
|
|
HG22
|
A:THR103
|
4.7
|
11.4
|
1.0
|
|
H
|
A:ASP110
|
4.7
|
13.0
|
1.0
|
|
CA
|
A:THR103
|
4.7
|
13.4
|
1.0
|
|
CA
|
A:CYS113
|
4.8
|
12.3
|
1.0
|
|
HB3
|
A:ALA102
|
4.8
|
13.3
|
1.0
|
|
SG
|
A:CYS109
|
4.8
|
8.9
|
1.0
|
|
CA
|
A:CYS109
|
4.8
|
9.6
|
1.0
|
|
HB2
|
A:CYS109
|
4.8
|
12.3
|
1.0
|
|
HA
|
A:CYS113
|
4.8
|
14.7
|
1.0
|
|
HB2
|
A:CYS113
|
4.9
|
15.8
|
1.0
|
|
CA
|
A:THR99
|
4.9
|
13.7
|
1.0
|
|
HA
|
A:CYS100
|
4.9
|
11.8
|
1.0
|
|
HA
|
A:LYS101
|
5.0
|
12.3
|
1.0
|
|
C
|
A:ALA102
|
5.0
|
12.4
|
1.0
|
|
Iron binding site 5 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 5 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:17.6
occ:1.00
|
FE1
|
B:FES201
|
0.0
|
17.6
|
1.0
|
|
S1
|
B:FES201
|
2.2
|
16.3
|
1.0
|
|
S2
|
B:FES201
|
2.2
|
14.6
|
1.0
|
|
SG
|
B:CYS71
|
2.3
|
12.0
|
1.0
|
|
SG
|
B:CYS75
|
2.4
|
16.4
|
1.0
|
|
FE2
|
B:FES201
|
2.7
|
16.2
|
1.0
|
|
HB3
|
B:CYS75
|
2.9
|
20.9
|
1.0
|
|
H
|
B:CYS75
|
3.0
|
20.5
|
1.0
|
|
HB2
|
B:CYS71
|
3.0
|
19.6
|
1.0
|
|
CB
|
B:CYS71
|
3.2
|
16.3
|
1.0
|
|
CB
|
B:CYS75
|
3.2
|
17.4
|
1.0
|
|
H
|
B:GLY73
|
3.3
|
15.4
|
1.0
|
|
HA
|
B:CYS71
|
3.5
|
20.8
|
1.0
|
|
HB3
|
B:PRO84
|
3.5
|
16.1
|
1.0
|
|
HD3
|
B:PRO84
|
3.5
|
15.4
|
1.0
|
|
N
|
B:CYS75
|
3.8
|
17.1
|
1.0
|
|
CA
|
B:CYS71
|
3.8
|
17.3
|
1.0
|
|
HB2
|
B:CYS75
|
3.9
|
20.9
|
1.0
|
|
H
|
B:ASP72
|
3.9
|
22.9
|
1.0
|
|
HA
|
B:CYS60
|
4.0
|
14.9
|
1.0
|
|
HB3
|
B:CYS71
|
4.0
|
19.6
|
1.0
|
|
N
|
B:GLY73
|
4.1
|
12.9
|
1.0
|
|
CA
|
B:CYS75
|
4.1
|
20.0
|
1.0
|
|
HA2
|
B:GLY73
|
4.2
|
20.8
|
1.0
|
|
CB
|
B:PRO84
|
4.3
|
13.4
|
1.0
|
|
CD
|
B:PRO84
|
4.3
|
12.8
|
1.0
|
|
H
|
B:SER74
|
4.4
|
17.4
|
1.0
|
|
N
|
B:ASP72
|
4.4
|
19.1
|
1.0
|
|
HG3
|
B:PRO84
|
4.4
|
18.4
|
1.0
|
|
SG
|
B:CYS62
|
4.4
|
16.8
|
1.0
|
|
HA
|
B:PRO84
|
4.5
|
16.1
|
1.0
|
|
CA
|
B:GLY73
|
4.5
|
17.3
|
1.0
|
|
HB2
|
B:SER65
|
4.5
|
22.0
|
1.0
|
|
N
|
B:SER74
|
4.5
|
14.5
|
1.0
|
|
C
|
B:CYS71
|
4.5
|
20.4
|
1.0
|
|
N
|
B:PRO84
|
4.6
|
12.5
|
1.0
|
|
HB2
|
B:CYS60
|
4.6
|
19.9
|
1.0
|
|
C
|
B:GLY73
|
4.6
|
21.1
|
1.0
|
|
CG
|
B:PRO84
|
4.6
|
15.4
|
1.0
|
|
HA
|
B:CYS75
|
4.7
|
24.1
|
1.0
|
|
H
|
B:VAL61
|
4.7
|
17.8
|
1.0
|
|
SG
|
B:CYS60
|
4.7
|
14.1
|
1.0
|
|
HB2
|
B:SER74
|
4.7
|
21.9
|
1.0
|
|
H
|
B:PHE76
|
4.7
|
18.5
|
1.0
|
|
HA
|
B:SER83
|
4.8
|
18.0
|
1.0
|
|
CA
|
B:PRO84
|
4.8
|
13.4
|
1.0
|
|
CA
|
B:CYS60
|
4.8
|
12.4
|
1.0
|
|
H
|
B:CYS62
|
4.9
|
18.7
|
1.0
|
|
C
|
B:SER74
|
4.9
|
21.1
|
1.0
|
|
CB
|
B:CYS60
|
5.0
|
16.6
|
1.0
|
|
Iron binding site 6 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 6 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:16.2
occ:1.00
|
FE2
|
B:FES201
|
0.0
|
16.2
|
1.0
|
|
S2
|
B:FES201
|
2.2
|
14.6
|
1.0
|
|
S1
|
B:FES201
|
2.2
|
16.3
|
1.0
|
|
SG
|
B:CYS60
|
2.4
|
14.1
|
1.0
|
|
SG
|
B:CYS62
|
2.4
|
16.8
|
1.0
|
|
FE1
|
B:FES201
|
2.7
|
17.6
|
1.0
|
|
H
|
B:CYS62
|
2.8
|
18.7
|
1.0
|
|
HB3
|
B:CYS75
|
3.2
|
20.9
|
1.0
|
|
HA
|
B:CYS60
|
3.3
|
14.9
|
1.0
|
|
CB
|
B:CYS60
|
3.5
|
16.6
|
1.0
|
|
HB2
|
B:CYS60
|
3.5
|
19.9
|
1.0
|
|
CB
|
B:CYS62
|
3.6
|
17.7
|
1.0
|
|
H
|
B:ARG64
|
3.6
|
23.4
|
1.0
|
|
N
|
B:CYS62
|
3.6
|
15.6
|
1.0
|
|
HB3
|
B:CYS62
|
3.6
|
21.3
|
1.0
|
|
HB2
|
B:SER65
|
3.6
|
22.0
|
1.0
|
|
H
|
B:SER65
|
3.7
|
26.1
|
1.0
|
|
H
|
B:VAL61
|
3.7
|
17.8
|
1.0
|
|
H
|
B:CYS75
|
3.7
|
20.5
|
1.0
|
|
H
|
B:GLY63
|
3.8
|
20.1
|
1.0
|
|
CA
|
B:CYS60
|
3.8
|
12.4
|
1.0
|
|
HA
|
B:CYS71
|
3.9
|
20.8
|
1.0
|
|
N
|
B:VAL61
|
4.0
|
14.8
|
1.0
|
|
CB
|
B:CYS75
|
4.1
|
17.4
|
1.0
|
|
CA
|
B:CYS62
|
4.1
|
14.4
|
1.0
|
|
C
|
B:CYS60
|
4.2
|
12.1
|
1.0
|
|
HB2
|
B:CYS71
|
4.2
|
19.6
|
1.0
|
|
N
|
B:SER65
|
4.2
|
21.8
|
1.0
|
|
N
|
B:GLY63
|
4.2
|
16.8
|
1.0
|
|
HB3
|
B:CYS60
|
4.3
|
19.9
|
1.0
|
|
N
|
B:ARG64
|
4.3
|
19.5
|
1.0
|
|
HB2
|
B:ARG64
|
4.4
|
26.4
|
1.0
|
|
N
|
B:CYS75
|
4.4
|
17.1
|
1.0
|
|
HB2
|
B:SER74
|
4.4
|
21.9
|
1.0
|
|
SG
|
B:CYS75
|
4.4
|
16.4
|
1.0
|
|
CB
|
B:SER65
|
4.4
|
18.4
|
1.0
|
|
HB2
|
B:CYS62
|
4.4
|
21.3
|
1.0
|
|
C
|
B:CYS62
|
4.5
|
23.0
|
1.0
|
|
HB3
|
B:SER65
|
4.5
|
22.0
|
1.0
|
|
CA
|
B:CYS75
|
4.7
|
20.0
|
1.0
|
|
CB
|
B:CYS71
|
4.7
|
16.3
|
1.0
|
|
HG22
|
B:VAL61
|
4.7
|
16.0
|
1.0
|
|
HA
|
B:CYS75
|
4.7
|
24.1
|
1.0
|
|
SG
|
B:CYS71
|
4.7
|
12.0
|
1.0
|
|
CA
|
B:CYS71
|
4.7
|
17.3
|
1.0
|
|
C
|
B:VAL61
|
4.7
|
18.1
|
1.0
|
|
H
|
B:ASP72
|
4.7
|
22.9
|
1.0
|
|
CA
|
B:SER65
|
4.8
|
14.8
|
1.0
|
|
HB2
|
B:CYS75
|
4.8
|
20.9
|
1.0
|
|
HA
|
B:SER65
|
4.8
|
17.7
|
1.0
|
|
HE22
|
B:GLN68
|
4.8
|
24.1
|
1.0
|
|
C
|
B:ARG64
|
4.9
|
24.8
|
1.0
|
|
CA
|
B:VAL61
|
5.0
|
15.2
|
1.0
|
|
HA
|
B:CYS62
|
5.0
|
17.3
|
1.0
|
|
Iron binding site 7 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 7 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:23.4
occ:1.00
|
FE1
|
B:FES202
|
0.0
|
23.4
|
1.0
|
|
S1
|
B:FES202
|
2.2
|
21.7
|
1.0
|
|
S2
|
B:FES202
|
2.2
|
23.2
|
1.0
|
|
SG
|
B:CYS109
|
2.3
|
21.1
|
1.0
|
|
SG
|
B:CYS113
|
2.5
|
27.3
|
1.0
|
|
FE2
|
B:FES202
|
2.7
|
22.6
|
1.0
|
|
HB3
|
B:CYS113
|
2.9
|
34.4
|
1.0
|
|
H
|
B:CYS113
|
3.1
|
41.6
|
1.0
|
|
HB2
|
B:CYS109
|
3.1
|
31.5
|
1.0
|
|
CB
|
B:CYS109
|
3.2
|
26.2
|
1.0
|
|
CB
|
B:CYS113
|
3.2
|
28.6
|
1.0
|
|
HA
|
B:CYS109
|
3.3
|
28.6
|
1.0
|
|
HB3
|
B:PRO46
|
3.4
|
20.8
|
1.0
|
|
HD3
|
B:PRO46
|
3.4
|
28.9
|
1.0
|
|
H
|
B:GLY111
|
3.4
|
30.9
|
1.0
|
|
CA
|
B:CYS109
|
3.7
|
23.9
|
1.0
|
|
N
|
B:CYS113
|
3.8
|
34.7
|
1.0
|
|
H
|
B:ASP110
|
3.9
|
26.2
|
1.0
|
|
HB2
|
B:CYS113
|
4.0
|
34.4
|
1.0
|
|
HA
|
B:CYS98
|
4.0
|
24.5
|
1.0
|
|
HB3
|
B:CYS109
|
4.1
|
31.5
|
1.0
|
|
HG3
|
B:PRO46
|
4.1
|
29.8
|
1.0
|
|
N
|
B:GLY111
|
4.1
|
25.8
|
1.0
|
|
CA
|
B:CYS113
|
4.2
|
30.7
|
1.0
|
|
CD
|
B:PRO46
|
4.3
|
24.1
|
1.0
|
|
HA2
|
B:GLY111
|
4.3
|
41.3
|
1.0
|
|
H
|
B:THR112
|
4.3
|
35.5
|
1.0
|
|
CB
|
B:PRO46
|
4.3
|
17.3
|
1.0
|
|
N
|
B:ASP110
|
4.3
|
21.8
|
1.0
|
|
HB2
|
B:CYS98
|
4.4
|
22.7
|
1.0
|
|
C
|
B:CYS109
|
4.4
|
20.8
|
1.0
|
|
SG
|
B:CYS100
|
4.5
|
20.3
|
1.0
|
|
CG
|
B:PRO46
|
4.5
|
24.8
|
1.0
|
|
N
|
B:THR112
|
4.5
|
29.6
|
1.0
|
|
CA
|
B:GLY111
|
4.6
|
34.4
|
1.0
|
|
H
|
B:THR99
|
4.6
|
24.7
|
1.0
|
|
HA
|
B:CYS113
|
4.7
|
36.8
|
1.0
|
|
C
|
B:GLY111
|
4.7
|
31.9
|
1.0
|
|
SG
|
B:CYS98
|
4.7
|
17.7
|
1.0
|
|
HB
|
B:THR103
|
4.8
|
25.4
|
1.0
|
|
HB
|
B:THR112
|
4.8
|
33.2
|
1.0
|
|
CB
|
B:CYS98
|
4.8
|
18.9
|
1.0
|
|
H
|
B:CYS100
|
4.8
|
21.7
|
1.0
|
|
CA
|
B:CYS98
|
4.8
|
20.4
|
1.0
|
|
N
|
B:PRO46
|
4.9
|
20.8
|
1.0
|
|
HA
|
B:PRO46
|
4.9
|
24.9
|
1.0
|
|
HB2
|
B:PRO46
|
5.0
|
20.8
|
1.0
|
|
C
|
B:THR112
|
5.0
|
36.1
|
1.0
|
|
HB3
|
B:CYS100
|
5.0
|
26.5
|
1.0
|
|
Iron binding site 8 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 8 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:22.6
occ:1.00
|
FE2
|
B:FES202
|
0.0
|
22.6
|
1.0
|
|
S2
|
B:FES202
|
2.2
|
23.2
|
1.0
|
|
S1
|
B:FES202
|
2.2
|
21.7
|
1.0
|
|
SG
|
B:CYS100
|
2.4
|
20.3
|
1.0
|
|
SG
|
B:CYS98
|
2.4
|
17.7
|
1.0
|
|
FE1
|
B:FES202
|
2.7
|
23.4
|
1.0
|
|
H
|
B:CYS100
|
3.0
|
21.7
|
1.0
|
|
HB3
|
B:CYS113
|
3.3
|
34.4
|
1.0
|
|
HB2
|
B:CYS98
|
3.3
|
22.7
|
1.0
|
|
CB
|
B:CYS98
|
3.4
|
18.9
|
1.0
|
|
HA
|
B:CYS98
|
3.4
|
24.5
|
1.0
|
|
H
|
B:LYS101
|
3.5
|
25.0
|
1.0
|
|
H
|
B:THR99
|
3.5
|
24.7
|
1.0
|
|
CB
|
B:CYS100
|
3.5
|
22.1
|
1.0
|
|
HB3
|
B:CYS100
|
3.5
|
26.5
|
1.0
|
|
HB
|
B:THR103
|
3.6
|
25.4
|
1.0
|
|
H
|
B:ALA102
|
3.7
|
25.7
|
1.0
|
|
N
|
B:CYS100
|
3.7
|
18.1
|
1.0
|
|
H
|
B:THR103
|
3.8
|
27.5
|
1.0
|
|
HA
|
B:CYS109
|
3.8
|
28.6
|
1.0
|
|
CA
|
B:CYS98
|
3.9
|
20.4
|
1.0
|
|
H
|
B:CYS113
|
4.0
|
41.6
|
1.0
|
|
N
|
B:LYS101
|
4.0
|
20.8
|
1.0
|
|
N
|
B:THR99
|
4.0
|
20.6
|
1.0
|
|
CA
|
B:CYS100
|
4.1
|
24.4
|
1.0
|
|
CB
|
B:CYS113
|
4.1
|
28.6
|
1.0
|
|
HB
|
B:THR112
|
4.2
|
33.2
|
1.0
|
|
HB3
|
B:CYS98
|
4.2
|
22.7
|
1.0
|
|
N
|
B:THR103
|
4.3
|
22.9
|
1.0
|
|
C
|
B:CYS98
|
4.4
|
19.8
|
1.0
|
|
HB2
|
B:CYS100
|
4.4
|
26.5
|
1.0
|
|
HB2
|
B:CYS109
|
4.4
|
31.5
|
1.0
|
|
C
|
B:CYS100
|
4.4
|
23.4
|
1.0
|
|
N
|
B:CYS113
|
4.4
|
34.7
|
1.0
|
|
N
|
B:ALA102
|
4.5
|
21.4
|
1.0
|
|
CB
|
B:THR103
|
4.5
|
21.1
|
1.0
|
|
SG
|
B:CYS113
|
4.5
|
27.3
|
1.0
|
|
HA
|
B:CYS113
|
4.6
|
36.8
|
1.0
|
|
HA
|
B:THR103
|
4.7
|
26.4
|
1.0
|
|
CA
|
B:CYS113
|
4.7
|
30.7
|
1.0
|
|
H
|
B:ASP110
|
4.7
|
26.2
|
1.0
|
|
CA
|
B:CYS109
|
4.7
|
23.9
|
1.0
|
|
CA
|
B:THR103
|
4.7
|
22.0
|
1.0
|
|
SG
|
B:CYS109
|
4.7
|
21.1
|
1.0
|
|
C
|
B:THR99
|
4.8
|
19.2
|
1.0
|
|
HG22
|
B:THR103
|
4.8
|
26.6
|
1.0
|
|
CB
|
B:CYS109
|
4.8
|
26.2
|
1.0
|
|
HB2
|
B:CYS113
|
4.8
|
34.4
|
1.0
|
|
HB3
|
B:ALA102
|
4.9
|
27.2
|
1.0
|
|
HB3
|
B:PRO46
|
4.9
|
20.8
|
1.0
|
|
HA
|
B:CYS100
|
5.0
|
29.3
|
1.0
|
|
Iron binding site 9 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 9 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:13.4
occ:1.00
|
FE1
|
C:FES201
|
0.0
|
13.4
|
1.0
|
|
S2
|
C:FES201
|
2.2
|
11.2
|
1.0
|
|
S1
|
C:FES201
|
2.3
|
10.9
|
1.0
|
|
SG
|
C:CYS71
|
2.4
|
12.6
|
1.0
|
|
SG
|
C:CYS75
|
2.4
|
12.2
|
1.0
|
|
FE2
|
C:FES201
|
2.7
|
12.3
|
1.0
|
|
HB3
|
C:CYS75
|
2.9
|
15.2
|
1.0
|
|
H
|
C:CYS75
|
3.1
|
16.1
|
1.0
|
|
HB2
|
C:CYS71
|
3.1
|
16.5
|
1.0
|
|
CB
|
C:CYS75
|
3.2
|
12.7
|
1.0
|
|
CB
|
C:CYS71
|
3.2
|
13.7
|
1.0
|
|
HD3
|
C:PRO84
|
3.3
|
15.5
|
1.0
|
|
H
|
C:GLY73
|
3.3
|
17.8
|
1.0
|
|
HA
|
C:CYS71
|
3.4
|
16.6
|
1.0
|
|
HB3
|
C:PRO84
|
3.5
|
19.6
|
1.0
|
|
CA
|
C:CYS71
|
3.8
|
13.8
|
1.0
|
|
N
|
C:CYS75
|
3.9
|
13.4
|
1.0
|
|
H
|
C:ASP72
|
3.9
|
15.0
|
1.0
|
|
HB2
|
C:CYS75
|
3.9
|
15.2
|
1.0
|
|
HA
|
C:CYS60
|
3.9
|
13.5
|
1.0
|
|
HB3
|
C:CYS71
|
4.1
|
16.5
|
1.0
|
|
N
|
C:GLY73
|
4.1
|
14.8
|
1.0
|
|
HA2
|
C:GLY73
|
4.2
|
16.2
|
1.0
|
|
CD
|
C:PRO84
|
4.2
|
12.9
|
1.0
|
|
CA
|
C:CYS75
|
4.2
|
13.7
|
1.0
|
|
H
|
C:SER74
|
4.2
|
15.4
|
1.0
|
|
HG3
|
C:PRO84
|
4.2
|
20.5
|
1.0
|
|
N
|
C:ASP72
|
4.3
|
12.5
|
1.0
|
|
CB
|
C:PRO84
|
4.3
|
16.3
|
1.0
|
|
SG
|
C:CYS62
|
4.4
|
11.2
|
1.0
|
|
N
|
C:SER74
|
4.4
|
12.8
|
1.0
|
|
HB2
|
C:CYS60
|
4.4
|
16.4
|
1.0
|
|
C
|
C:CYS71
|
4.5
|
21.2
|
1.0
|
|
CA
|
C:GLY73
|
4.5
|
13.5
|
1.0
|
|
CG
|
C:PRO84
|
4.5
|
17.0
|
1.0
|
|
HB2
|
C:SER65
|
4.5
|
16.8
|
1.0
|
|
C
|
C:GLY73
|
4.6
|
11.9
|
1.0
|
|
N
|
C:PRO84
|
4.7
|
14.4
|
1.0
|
|
HA
|
C:SER83
|
4.7
|
20.7
|
1.0
|
|
HA
|
C:PRO84
|
4.7
|
18.6
|
1.0
|
|
H
|
C:VAL61
|
4.7
|
11.8
|
1.0
|
|
SG
|
C:CYS60
|
4.7
|
10.1
|
1.0
|
|
HA
|
C:CYS75
|
4.7
|
16.4
|
1.0
|
|
CA
|
C:CYS60
|
4.8
|
11.2
|
1.0
|
|
H
|
C:CYS62
|
4.8
|
16.5
|
1.0
|
|
HB2
|
C:SER74
|
4.9
|
13.7
|
1.0
|
|
CB
|
C:CYS60
|
4.9
|
13.7
|
1.0
|
|
H
|
C:PHE76
|
4.9
|
15.5
|
1.0
|
|
HD2
|
C:PRO84
|
4.9
|
15.5
|
1.0
|
|
CA
|
C:PRO84
|
4.9
|
15.5
|
1.0
|
|
Iron binding site 10 out
of 12 in 6avj
Go back to
Iron Binding Sites List in 6avj
Iron binding site 10 out
of 12 in the Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Human Mitochondrial Inner Neet Protein (Mint) /CISD3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:12.3
occ:1.00
|
FE2
|
C:FES201
|
0.0
|
12.3
|
1.0
|
|
S1
|
C:FES201
|
2.2
|
10.9
|
1.0
|
|
S2
|
C:FES201
|
2.2
|
11.2
|
1.0
|
|
SG
|
C:CYS60
|
2.4
|
10.1
|
1.0
|
|
SG
|
C:CYS62
|
2.4
|
11.2
|
1.0
|
|
FE1
|
C:FES201
|
2.7
|
13.4
|
1.0
|
|
H
|
C:CYS62
|
2.8
|
16.5
|
1.0
|
|
HB3
|
C:CYS75
|
3.2
|
15.2
|
1.0
|
|
HA
|
C:CYS60
|
3.3
|
13.5
|
1.0
|
|
CB
|
C:CYS60
|
3.3
|
13.7
|
1.0
|
|
HB2
|
C:CYS60
|
3.4
|
16.4
|
1.0
|
|
H
|
C:SER65
|
3.4
|
14.6
|
1.0
|
|
H
|
C:ARG64
|
3.5
|
12.3
|
1.0
|
|
CB
|
C:CYS62
|
3.5
|
12.7
|
1.0
|
|
N
|
C:CYS62
|
3.6
|
13.8
|
1.0
|
|
HB3
|
C:CYS62
|
3.6
|
15.2
|
1.0
|
|
HB2
|
C:SER65
|
3.7
|
16.8
|
1.0
|
|
CA
|
C:CYS60
|
3.7
|
11.2
|
1.0
|
|
H
|
C:GLY63
|
3.7
|
12.7
|
1.0
|
|
H
|
C:VAL61
|
3.8
|
11.8
|
1.0
|
|
HA
|
C:CYS71
|
3.8
|
16.6
|
1.0
|
|
H
|
C:CYS75
|
3.9
|
16.1
|
1.0
|
|
CA
|
C:CYS62
|
4.0
|
18.6
|
1.0
|
|
N
|
C:VAL61
|
4.0
|
9.9
|
1.0
|
|
N
|
C:SER65
|
4.1
|
12.1
|
1.0
|
|
CB
|
C:CYS75
|
4.1
|
12.7
|
1.0
|
|
C
|
C:CYS60
|
4.1
|
10.8
|
1.0
|
|
N
|
C:GLY63
|
4.2
|
10.6
|
1.0
|
|
HB3
|
C:CYS60
|
4.2
|
16.4
|
1.0
|
|
N
|
C:ARG64
|
4.3
|
10.3
|
1.0
|
|
HB2
|
C:ARG64
|
4.4
|
17.9
|
1.0
|
|
HB2
|
C:CYS62
|
4.4
|
15.2
|
1.0
|
|
HB2
|
C:CYS71
|
4.4
|
16.5
|
1.0
|
|
CB
|
C:SER65
|
4.4
|
14.0
|
1.0
|
|
HB2
|
C:SER74
|
4.4
|
13.7
|
1.0
|
|
HB3
|
C:SER65
|
4.4
|
16.8
|
1.0
|
|
SG
|
C:CYS75
|
4.5
|
12.2
|
1.0
|
|
N
|
C:CYS75
|
4.5
|
13.4
|
1.0
|
|
C
|
C:CYS62
|
4.5
|
11.1
|
1.0
|
|
H
|
C:ASP72
|
4.6
|
15.0
|
1.0
|
|
C
|
C:VAL61
|
4.7
|
15.7
|
1.0
|
|
CA
|
C:CYS71
|
4.7
|
13.8
|
1.0
|
|
CA
|
C:SER65
|
4.7
|
9.4
|
1.0
|
|
CA
|
C:CYS75
|
4.8
|
13.7
|
1.0
|
|
HA
|
C:CYS75
|
4.8
|
16.4
|
1.0
|
|
SG
|
C:CYS71
|
4.8
|
12.6
|
1.0
|
|
CB
|
C:CYS71
|
4.8
|
13.7
|
1.0
|
|
HB2
|
C:CYS75
|
4.8
|
15.2
|
1.0
|
|
HE22
|
C:GLN68
|
4.9
|
13.4
|
1.0
|
|
HA
|
C:SER65
|
4.9
|
11.3
|
1.0
|
|
C
|
C:ARG64
|
4.9
|
13.9
|
1.0
|
|
HA
|
C:CYS62
|
4.9
|
22.3
|
1.0
|
|
HB3
|
C:PRO84
|
4.9
|
19.6
|
1.0
|
|
CA
|
C:VAL61
|
5.0
|
10.1
|
1.0
|
|
CA
|
C:ARG64
|
5.0
|
10.6
|
1.0
|
|
Reference:
C.H.Lipper,
O.Karmi,
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ISSN: ESSN 1091-6490
PubMed: 29259115
DOI: 10.1073/PNAS.1715842115
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