Atomistry » Iron » PDB 6ayc-6bps » 6b8f
Atomistry »
  Iron »
    PDB 6ayc-6bps »
      6b8f »

Iron in PDB 6b8f: Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid

Enzymatic activity of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid

All present enzymatic activity of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid:
1.16.3.1;

Protein crystallography data

The structure of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid, PDB code: 6b8f was solved by L.Zhang, J.B.Bailey, R.Subramanian, F.A.Tezcan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.01 / 1.06
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 180.040, 180.040, 180.040, 90.00, 90.00, 90.00
R / Rfree (%) 9.1 / 10.3

Other elements in 6b8f:

The structure of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid also contains other interesting chemical elements:

Calcium (Ca) 11 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid (pdb code 6b8f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid, PDB code: 6b8f:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6b8f

Go back to Iron Binding Sites List in 6b8f
Iron binding site 1 out of 2 in the Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:8.7
occ:0.34
OE1 A:GLU27 2.1 12.1 1.0
OE2 A:GLU62 2.2 16.8 1.0
O A:HOH341 2.2 26.2 1.0
O A:HOH380 2.3 10.4 0.6
ND1 A:HIS65 2.4 17.1 1.0
CD A:GLU62 2.9 13.4 1.0
OE1 A:GLU62 2.9 20.0 1.0
CD A:GLU27 3.2 9.4 1.0
CE1 A:HIS65 3.2 19.7 1.0
HE1 A:HIS65 3.3 23.6 1.0
CG A:HIS65 3.5 13.6 1.0
HG11 A:VAL110 3.5 13.6 1.0
O A:HOH477 3.6 43.3 1.0
HB2 A:HIS65 3.6 11.7 1.0
OE2 A:GLU27 3.6 12.1 1.0
HB3 A:HIS65 3.7 11.7 1.0
HA A:GLU62 3.7 7.7 1.0
CB A:HIS65 3.8 9.7 1.0
OE1 A:GLN141 3.9 19.3 1.0
O A:HOH471 4.2 23.3 0.9
CG A:GLU62 4.2 9.4 1.0
HB3 A:GLU27 4.3 8.0 1.0
CG1 A:VAL110 4.4 11.3 1.0
HA A:GLU27 4.4 6.3 1.0
NE2 A:HIS65 4.4 18.8 1.0
CG A:GLU27 4.5 8.2 1.0
HB3 A:GLU62 4.5 9.6 1.0
CD2 A:HIS65 4.6 15.0 1.0
CA A:GLU62 4.6 6.4 1.0
CB A:GLU62 4.7 8.0 1.0
HG12 A:VAL110 4.7 13.6 1.0
HG3 A:GLU62 4.7 11.3 1.0
OE2 A:GLU107 4.7 18.0 1.0
HG13 A:VAL110 4.7 13.6 1.0
HB3 A:ALA30 4.7 7.1 1.0
HD2 A:TYR137 4.7 10.0 1.0
HG2 A:GLU62 4.8 11.3 1.0
HG21 A:VAL110 4.8 11.7 1.0
CB A:GLU27 4.8 6.7 1.0
HG3 A:GLU27 4.8 9.9 1.0
CD A:GLN141 4.8 12.5 1.0
HE2 A:TYR137 4.8 9.8 1.0
FE A:FE202 4.9 10.3 0.2
HE22 A:GLN141 5.0 17.6 1.0

Iron binding site 2 out of 2 in 6b8f

Go back to Iron Binding Sites List in 6b8f
Iron binding site 2 out of 2 in the Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Contracted Human Heavy-Chain Ferritin Crystal-Hydrogel Hybrid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:10.3
occ:0.24
O A:HOH307 1.7 15.9 0.8
O A:HOH314 2.2 13.8 0.6
O A:HOH477 2.3 43.3 1.0
OE1 A:GLN58 2.3 13.6 0.2
O A:HOH302 2.5 32.7 0.8
O A:HOH555 2.5 39.8 0.6
OE1 A:GLU62 2.6 20.0 1.0
OE1 A:GLU107 2.7 18.5 1.0
CD A:GLN58 3.5 13.4 0.2
HE2 A:TYR34 3.6 8.6 1.0
HH A:TYR34 3.6 14.7 1.0
CD A:GLU107 3.6 13.9 1.0
OE1 A:GLN58 3.6 14.4 0.8
O A:HOH476 3.6 29.7 1.0
HE1 A:HIS65 3.7 23.6 1.0
HE22 A:GLN58 3.7 18.0 0.2
CD A:GLU62 3.8 13.4 1.0
OE1 A:GLU61 3.8 22.6 0.3
HB1 A:ALA144 3.8 10.1 1.0
OE2 A:GLU107 3.9 18.0 1.0
HB3 A:GLN58 3.9 8.9 0.8
HG2 A:GLU62 4.0 11.3 1.0
HB2 A:ALA144 4.0 10.1 1.0
NE2 A:GLN58 4.0 15.0 0.2
CE2 A:TYR34 4.1 7.2 1.0
OH A:TYR34 4.2 12.2 1.0
O A:HOH341 4.2 26.2 1.0
O A:HOH483 4.2 27.9 0.7
OE2 A:GLU140 4.3 20.1 0.4
CB A:ALA144 4.3 8.4 1.0
CG A:GLU62 4.4 9.4 1.0
HB3 A:GLN58 4.5 10.5 0.2
OE1 A:GLU61 4.5 22.6 0.3
CZ A:TYR34 4.5 8.9 1.0
CE1 A:HIS65 4.5 19.7 1.0
HA A:GLN58 4.6 8.4 0.2
CD A:GLN58 4.6 11.9 0.8
HA A:GLN58 4.6 7.8 0.8
CD A:GLU61 4.7 21.0 0.3
HB3 A:GLU61 4.7 15.1 0.3
HG3 A:GLU107 4.7 10.8 1.0
OE2 A:GLU62 4.7 16.8 1.0
HB3 A:ALA144 4.7 10.1 1.0
CG A:GLN58 4.7 10.9 0.2
CB A:GLN58 4.8 7.4 0.8
HB2 A:GLU61 4.8 15.1 0.3
HG3 A:GLU62 4.8 11.3 1.0
HG3 A:GLN58 4.8 10.1 0.8
CG A:GLU107 4.8 9.0 1.0
HB2 A:GLU61 4.8 6.5 0.4
HB3 A:GLU61 4.9 15.1 0.3
HE21 A:GLN58 4.9 18.0 0.2
FE A:FE201 4.9 8.7 0.3
O A:HOH501 4.9 10.9 0.7
O A:GLN58 4.9 6.8 1.0
HG2 A:GLU61 5.0 19.7 0.3
CG A:GLN58 5.0 8.4 0.8
CB A:GLN58 5.0 8.8 0.2
HG3 A:GLN58 5.0 13.1 0.2

Reference:

L.Zhang, J.B.Bailey, R.H.Subramanian, F.A.Tezcan. Hyperexpandable, Self-Healing Macromolecular Crystals with Integrated Polymer Networks. Nature V. 557 86 2018.
ISSN: ESSN 1476-4687
PubMed: 29720635
DOI: 10.1038/S41586-018-0057-7
Page generated: Sun Dec 13 16:21:11 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy