Atomistry » Iron » PDB 6ayc-6bps » 6bdd
Atomistry »
  Iron »
    PDB 6ayc-6bps »
      6bdd »

Iron in PDB 6bdd: Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida

Protein crystallography data

The structure of Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida, PDB code: 6bdd was solved by J.J.Bruegger, C.W.Hespen, M.A.Marletta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.17 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.966, 57.613, 68.796, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida (pdb code 6bdd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida, PDB code: 6bdd:

Iron binding site 1 out of 1 in 6bdd

Go back to Iron Binding Sites List in 6bdd
Iron binding site 1 out of 1 in the Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Fe(II) Unliganded H-Nox Protein From K. Algicida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:30.4
occ:1.00
FE A:HEM201 0.0 30.4 1.0
NC A:HEM201 2.0 32.0 1.0
NB A:HEM201 2.0 32.8 1.0
NA A:HEM201 2.0 28.2 1.0
NE2 A:HIS104 2.0 35.2 1.0
ND A:HEM201 2.0 32.0 1.0
CE1 A:HIS104 2.8 30.4 1.0
C4C A:HEM201 3.0 26.8 1.0
C1D A:HEM201 3.0 30.7 1.0
C4A A:HEM201 3.0 30.2 1.0
C1B A:HEM201 3.0 34.2 1.0
C1A A:HEM201 3.1 30.3 1.0
C4B A:HEM201 3.1 30.6 1.0
C1C A:HEM201 3.1 31.2 1.0
C4D A:HEM201 3.1 25.4 1.0
CD2 A:HIS104 3.1 32.1 1.0
CHD A:HEM201 3.4 30.2 1.0
CHB A:HEM201 3.4 37.8 1.0
CHA A:HEM201 3.5 25.0 1.0
CHC A:HEM201 3.5 32.6 1.0
ND1 A:HIS104 4.0 30.2 1.0
CG A:HIS104 4.2 35.3 1.0
C2D A:HEM201 4.2 27.4 1.0
C3C A:HEM201 4.2 27.2 1.0
C3A A:HEM201 4.3 31.7 1.0
C3D A:HEM201 4.3 25.8 1.0
C2B A:HEM201 4.3 35.8 1.0
C2A A:HEM201 4.3 34.1 1.0
C2C A:HEM201 4.3 23.9 1.0
C3B A:HEM201 4.3 33.9 1.0
CD1 A:LEU146 4.3 29.6 1.0
CD2 A:LEU116 4.8 32.5 1.0

Reference:

C.W.Hespen, J.J.Bruegger, Y.Guo, M.A.Marletta. Native Alanine Substitution in the Glycine Hinge Modulates Conformational Flexibility of Heme Nitric Oxide/Oxygen (H-Nox) Sensing Proteins. Acs Chem. Biol. V. 13 1631 2018.
ISSN: ESSN 1554-8937
PubMed: 29757599
DOI: 10.1021/ACSCHEMBIO.8B00248
Page generated: Sun Dec 13 16:21:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy