Iron in PDB 6btm: Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Iron atom in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) (pdb code 6btm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 13 binding sites of Iron where determined in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type), PDB code: 6btm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1000 b:0.7 occ:1.00 FE A:HEC1000 0.0 0.7 1.0 NE2 A:HIS298 2.0 0.8 1.0 NE2 A:HIS265 2.0 0.7 1.0 NB A:HEC1000 2.0 0.7 1.0 ND A:HEC1000 2.0 0.7 1.0 NA A:HEC1000 2.0 0.7 1.0 NC A:HEC1000 2.0 0.7 1.0 CE1 A:HIS298 2.8 0.8 1.0 CE1 A:HIS265 2.9 0.7 1.0 C1C A:HEC1000 3.0 0.7 1.0 C4B A:HEC1000 3.0 0.7 1.0 C1A A:HEC1000 3.0 0.7 1.0 C4D A:HEC1000 3.0 0.7 1.0 CD2 A:HIS265 3.0 0.7 1.0 C1D A:HEC1000 3.1 0.7 1.0 C1B A:HEC1000 3.1 0.7 1.0 C4A A:HEC1000 3.1 0.7 1.0 C4C A:HEC1000 3.1 0.7 1.0 CD2 A:HIS298 3.1 0.8 1.0 CHA A:HEC1000 3.4 0.7 1.0 CHC A:HEC1000 3.4 0.7 1.0 CHD A:HEC1000 3.4 0.7 1.0 CHB A:HEC1000 3.5 0.7 1.0 ND1 A:HIS298 4.0 0.8 1.0 ND1 A:HIS265 4.1 0.7 1.0 CG A:HIS265 4.1 0.7 1.0 CG A:HIS298 4.2 0.8 1.0 C2A A:HEC1000 4.2 0.7 1.0 C3B A:HEC1000 4.2 0.7 1.0 C2B A:HEC1000 4.2 0.7 1.0 C2C A:HEC1000 4.2 0.7 1.0 C3A A:HEC1000 4.2 0.7 1.0 C3C A:HEC1000 4.2 0.7 1.0 C3D A:HEC1000 4.3 0.7 1.0 C2D A:HEC1000 4.3 0.7 1.0

Iron binding site 2 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1001 b:0.3 occ:1.00 FE A:HEC1001 0.0 0.3 1.0 NE2 A:HIS277 2.0 0.6 1.0 NE2 A:HIS262 2.0 0.6 1.0 NC A:HEC1001 2.0 0.3 1.0 ND A:HEC1001 2.0 0.3 1.0 NB A:HEC1001 2.1 0.3 1.0 NA A:HEC1001 2.1 0.3 1.0 CE1 A:HIS262 2.6 0.6 1.0 CD2 A:HIS277 2.9 0.6 1.0 C1D A:HEC1001 3.0 0.3 1.0 C4C A:HEC1001 3.0 0.3 1.0 C1C A:HEC1001 3.0 0.3 1.0 C4D A:HEC1001 3.1 0.3 1.0 CE1 A:HIS277 3.1 0.6 1.0 C4B A:HEC1001 3.1 0.3 1.0 C1A A:HEC1001 3.1 0.3 1.0 C1B A:HEC1001 3.1 0.3 1.0 C4A A:HEC1001 3.1 0.3 1.0 CD2 A:HIS262 3.3 0.6 1.0 CHD A:HEC1001 3.4 0.3 1.0 CHA A:HEC1001 3.4 0.3 1.0 CHC A:HEC1001 3.4 0.3 1.0 CHB A:HEC1001 3.5 0.3 1.0 ND1 A:HIS262 3.9 0.6 1.0 CG A:HIS277 4.1 0.6 1.0 ND1 A:HIS277 4.1 0.6 1.0 CG A:HIS262 4.2 0.6 1.0 C2D A:HEC1001 4.3 0.3 1.0 C2C A:HEC1001 4.3 0.3 1.0 C3C A:HEC1001 4.3 0.3 1.0 C3D A:HEC1001 4.3 0.3 1.0 C2B A:HEC1001 4.3 0.3 1.0 C3B A:HEC1001 4.3 0.3 1.0 C3A A:HEC1001 4.3 0.3 1.0 C2A A:HEC1001 4.3 0.3 1.0

Iron binding site 3 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1002 b:0.7 occ:1.00 FE A:HEC1002 0.0 0.7 1.0 NE2 A:HIS376 2.0 0.2 1.0 NE2 A:HIS361 2.0 0.6 1.0 NC A:HEC1002 2.0 0.7 1.0 ND A:HEC1002 2.0 0.7 1.0 NA A:HEC1002 2.0 0.7 1.0 NB A:HEC1002 2.1 0.7 1.0 CE1 A:HIS361 2.7 0.6 1.0 C1C A:HEC1002 2.9 0.7 1.0 CD2 A:HIS376 3.0 0.2 1.0 C4D A:HEC1002 3.0 0.7 1.0 CE1 A:HIS376 3.0 0.2 1.0 C1A A:HEC1002 3.0 0.7 1.0 C4B A:HEC1002 3.0 0.7 1.0 C1D A:HEC1002 3.1 0.7 1.0 C4A A:HEC1002 3.1 0.7 1.0 C4C A:HEC1002 3.1 0.7 1.0 C1B A:HEC1002 3.1 0.7 1.0 CD2 A:HIS361 3.2 0.6 1.0 CHC A:HEC1002 3.3 0.7 1.0 CHA A:HEC1002 3.3 0.7 1.0 CHD A:HEC1002 3.5 0.7 1.0 CHB A:HEC1002 3.5 0.7 1.0 ND1 A:HIS361 3.9 0.6 1.0 ND1 A:HIS376 4.1 0.2 1.0 CG A:HIS376 4.1 0.2 1.0 C2C A:HEC1002 4.2 0.7 1.0 CG A:HIS361 4.2 0.6 1.0 C3D A:HEC1002 4.2 0.7 1.0 C2A A:HEC1002 4.2 0.7 1.0 C3A A:HEC1002 4.2 0.7 1.0 C2D A:HEC1002 4.3 0.7 1.0 C3C A:HEC1002 4.3 0.7 1.0 C3B A:HEC1002 4.3 0.7 1.0 C2B A:HEC1002 4.3 0.7 1.0 CE2 A:PHE359 4.8 0.8 1.0

Iron binding site 4 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1003 b:0.2 occ:1.00 FE A:HEC1003 0.0 0.2 1.0 NE2 A:HIS364 2.0 0.8 1.0 NE2 A:HIS400 2.0 0.9 1.0 NC A:HEC1003 2.0 0.2 1.0 NA A:HEC1003 2.0 0.2 1.0 ND A:HEC1003 2.0 0.2 1.0 NB A:HEC1003 2.1 0.2 1.0 CE1 A:HIS364 2.9 0.8 1.0 CD2 A:HIS400 2.9 0.9 1.0 C1C A:HEC1003 3.0 0.2 1.0 CE1 A:HIS400 3.0 0.9 1.0 C1A A:HEC1003 3.0 0.2 1.0 C4D A:HEC1003 3.0 0.2 1.0 CD2 A:HIS364 3.0 0.8 1.0 C4B A:HEC1003 3.1 0.2 1.0 C1D A:HEC1003 3.1 0.2 1.0 C4C A:HEC1003 3.1 0.2 1.0 C4A A:HEC1003 3.1 0.2 1.0 C1B A:HEC1003 3.1 0.2 1.0 CHA A:HEC1003 3.4 0.2 1.0 CHC A:HEC1003 3.4 0.2 1.0 CHD A:HEC1003 3.4 0.2 1.0 CHB A:HEC1003 3.5 0.2 1.0 ND1 A:HIS364 4.1 0.8 1.0 ND1 A:HIS400 4.1 0.9 1.0 CG A:HIS400 4.1 0.9 1.0 CG A:HIS364 4.1 0.8 1.0 C2C A:HEC1003 4.2 0.2 1.0 C2A A:HEC1003 4.3 0.2 1.0 C3A A:HEC1003 4.3 0.2 1.0 C3D A:HEC1003 4.3 0.2 1.0 C3C A:HEC1003 4.3 0.2 1.0 C2D A:HEC1003 4.3 0.2 1.0 C3B A:HEC1003 4.3 0.2 1.0 C2B A:HEC1003 4.3 0.2 1.0

Iron binding site 5 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1004 b:0.9 occ:1.00 FE A:HEC1004 0.0 0.9 1.0 NE2 A:HIS443 2.0 1.0 1.0 ND A:HEC1004 2.0 0.9 1.0 NB A:HEC1004 2.0 0.9 1.0 NC A:HEC1004 2.0 0.9 1.0 NA A:HEC1004 2.1 0.9 1.0 SD A:MET393 2.3 0.6 1.0 C1C A:HEC1004 2.9 0.9 1.0 C4D A:HEC1004 2.9 0.9 1.0 CE1 A:HIS443 3.0 1.0 1.0 C4B A:HEC1004 3.0 0.9 1.0 CD2 A:HIS443 3.0 1.0 1.0 C1A A:HEC1004 3.0 0.9 1.0 C1D A:HEC1004 3.1 0.9 1.0 C1B A:HEC1004 3.1 0.9 1.0 C4A A:HEC1004 3.2 0.9 1.0 C4C A:HEC1004 3.2 0.9 1.0 CHC A:HEC1004 3.3 0.9 1.0 CHA A:HEC1004 3.3 0.9 1.0 CE A:MET393 3.5 0.6 1.0 CHD A:HEC1004 3.5 0.9 1.0 CHB A:HEC1004 3.6 0.9 1.0 CG A:MET393 3.8 0.6 1.0 ND1 A:HIS443 4.1 1.0 1.0 CG A:HIS443 4.2 1.0 1.0 C2C A:HEC1004 4.2 0.9 1.0 C3D A:HEC1004 4.2 0.9 1.0 C2D A:HEC1004 4.2 0.9 1.0 C3B A:HEC1004 4.2 0.9 1.0 C2B A:HEC1004 4.3 0.9 1.0 C2A A:HEC1004 4.3 0.9 1.0 C3C A:HEC1004 4.3 0.9 1.0 C3A A:HEC1004 4.4 0.9 1.0 CB A:MET393 4.5 0.6 1.0

Iron binding site 6 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1101 b:0.8 occ:1.00 FE1 B:F3S1101 0.0 0.8 1.0 S1 B:F3S1101 2.2 0.8 1.0 S2 B:F3S1101 2.2 0.8 1.0 S3 B:F3S1101 2.3 0.8 1.0 SG B:CYS879 2.4 0.2 1.0 FE3 B:F3S1101 2.7 0.8 1.0 FE4 B:F3S1101 2.7 0.8 1.0 CB B:CYS879 3.5 0.2 1.0 CA B:CYS879 3.7 0.2 1.0 S4 B:F3S1101 4.1 0.8 1.0 C B:CYS879 4.2 0.2 1.0 N B:VAL880 4.5 0.7 1.0 CA B:GLY881 4.5 0.0 1.0 O B:VAL880 4.5 0.7 1.0 O B:THR882 4.6 0.2 1.0 C B:VAL880 4.7 0.7 1.0 SG B:CYS859 4.7 0.2 1.0 CE B:MET874 4.7 0.0 1.0 SG B:CYS885 4.8 0.4 1.0 O B:CYS879 4.8 0.2 1.0 N B:GLY881 4.9 0.0 1.0 CB B:ALA863 5.0 0.0 1.0 N B:THR882 5.0 0.2 1.0

Iron binding site 7 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1101 b:0.8 occ:1.00 FE3 B:F3S1101 0.0 0.8 1.0 SG B:CYS859 2.3 0.2 1.0 S3 B:F3S1101 2.3 0.8 1.0 S1 B:F3S1101 2.3 0.8 1.0 S4 B:F3S1101 2.3 0.8 1.0 FE4 B:F3S1101 2.6 0.8 1.0 FE1 B:F3S1101 2.7 0.8 1.0 CB B:CYS859 3.3 0.2 1.0 S2 B:F3S1101 3.7 0.8 1.0 CA B:CYS859 3.9 0.2 1.0 CD B:PRO860 4.4 0.3 1.0 CB B:ALA863 4.5 0.0 1.0 C B:CYS859 4.7 0.2 1.0 O B:THR882 4.7 0.2 1.0 SG B:CYS885 4.7 0.4 1.0 SG B:CYS879 4.8 0.2 1.0 N B:PRO860 4.9 0.3 1.0 OG1 B:THR882 4.9 0.2 1.0 N B:ALA863 5.0 0.0 1.0

Iron binding site 8 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1101 b:0.8 occ:1.00 FE4 B:F3S1101 0.0 0.8 1.0 S4 B:F3S1101 2.2 0.8 1.0 S2 B:F3S1101 2.2 0.8 1.0 S3 B:F3S1101 2.3 0.8 1.0 SG B:CYS885 2.3 0.4 1.0 FE3 B:F3S1101 2.6 0.8 1.0 FE1 B:F3S1101 2.7 0.8 1.0 CB B:CYS885 3.4 0.4 1.0 S1 B:F3S1101 3.9 0.8 1.0 N B:CYS885 4.1 0.4 1.0 O B:THR882 4.2 0.2 1.0 SD B:MET932 4.3 0.6 1.0 CA B:CYS885 4.4 0.4 1.0 NH1 B:ARG894 4.5 0.3 1.0 SG B:CYS859 4.5 0.2 1.0 SG B:CYS879 4.7 0.2 1.0 CB B:CYS859 4.9 0.2 1.0 N B:TYR884 4.9 0.3 1.0 CE B:MET932 5.0 0.6 1.0

Iron binding site 9 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1102 b:0.0 occ:1.00 FE1 B:SF41102 0.0 0.0 1.0 SG B:CYS855 2.1 0.3 1.0 S2 B:SF41102 2.2 0.0 1.0 S3 B:SF41102 2.3 0.0 1.0 S4 B:SF41102 2.3 0.0 1.0 FE2 B:SF41102 2.9 0.0 1.0 FE3 B:SF41102 2.9 0.0 1.0 FE4 B:SF41102 2.9 0.0 1.0 CB B:CYS855 3.2 0.3 1.0 NH2 B:ARG894 3.5 0.3 1.0 OD1 B:ASN872 3.5 0.6 1.0 S1 B:SF41102 3.8 0.0 1.0 CA B:CYS855 4.4 0.3 1.0 N B:CYS855 4.4 0.3 1.0 CB B:ALA853 4.5 0.9 1.0 SG B:CYS847 4.5 0.1 1.0 CZ B:ARG894 4.7 0.3 1.0 CG B:ASN872 4.7 0.6 1.0 SG B:CYS889 4.9 0.9 1.0

Iron binding site 10 out of 13 in the Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Alternative Complex III From Flavobacterium Johnsoniae (Wild Type) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1102 b:0.0 occ:1.00 FE2 B:SF41102 0.0 0.0 1.0 S1 B:SF41102 2.2 0.0 1.0 SG B:CYS889 2.2 0.9 1.0 S3 B:SF41102 2.3 0.0 1.0 S4 B:SF41102 2.3 0.0 1.0 FE1 B:SF41102 2.9 0.0 1.0 FE3 B:SF41102 2.9 0.0 1.0 FE4 B:SF41102 3.0 0.0 1.0 CB B:CYS889 3.3 0.9 1.0 S2 B:SF41102 3.8 0.0 1.0 CA B:CYS889 4.1 0.9 1.0 SG B:CYS847 4.3 0.1 1.0 SG B:CYS855 4.7 0.3 1.0 CD2 B:TYR891 4.7 0.1 1.0 NH2 B:ARG894 4.8 0.3 1.0 O B:VAL893 4.8 0.7 1.0 CB B:CYS855 4.9 0.3 1.0

C.Sun, S.Benlekbir, P.Venkatakrishnan, Y.Wang, S.Hong, J.Hosler, E.Tajkhorshid, J.L.Rubinstein, R.B.Gennis. Structure of the Alternative Complex III in A Supercomplex with Cytochrome Oxidase. Nature V. 557 123 2018.
ISSN: ESSN 1476-4687
PubMed: 29695868
DOI: 10.1038/S41586-018-0061-Y