Iron in PDB 6cfw: Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase

All present enzymatic activity of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase:
1.12.7.2;

The structure of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Iron atom in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase (pdb code 6cfw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 13 binding sites of Iron where determined in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase, PDB code: 6cfw:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe201 b:57.3 occ:1.00 FE1 J:SF4201 0.0 57.3 1.0 S2 J:SF4201 2.2 57.3 1.0 S3 J:SF4201 2.3 57.3 1.0 S4 J:SF4201 2.3 57.3 1.0 FE3 J:SF4201 2.7 57.3 1.0 FE2 J:SF4201 2.7 57.3 1.0 FE4 J:SF4201 2.7 57.3 1.0 SG J:CYS102 3.2 40.6 1.0 CB J:CYS102 3.7 40.6 1.0 S1 J:SF4201 3.9 57.3 1.0 N J:CYS102 4.5 40.6 1.0 SG J:CYS35 4.7 54.7 1.0 OG J:SER34 4.7 55.4 1.0 CA J:CYS102 4.7 40.6 1.0 CD J:PRO74 4.8 43.6 1.0

Iron binding site 2 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe201 b:57.3 occ:1.00 FE2 J:SF4201 0.0 57.3 1.0 S1 J:SF4201 2.2 57.3 1.0 S4 J:SF4201 2.3 57.3 1.0 S3 J:SF4201 2.3 57.3 1.0 FE3 J:SF4201 2.6 57.3 1.0 FE4 J:SF4201 2.6 57.3 1.0 FE1 J:SF4201 2.7 57.3 1.0 SG J:CYS132 3.0 47.5 1.0 S2 J:SF4201 3.8 57.3 1.0 CB J:CYS132 3.9 47.5 1.0 CA J:CYS132 4.2 47.5 1.0 SG J:CYS102 4.4 40.6 1.0 C J:CYS132 4.7 47.5 1.0 N J:ALA101 4.7 38.0 1.0 N J:PRO133 5.0 46.7 1.0 O J:GLY131 5.0 46.0 1.0

Iron binding site 3 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe201 b:57.3 occ:1.00 FE3 J:SF4201 0.0 57.3 1.0 S4 J:SF4201 2.2 57.3 1.0 S2 J:SF4201 2.3 57.3 1.0 S1 J:SF4201 2.3 57.3 1.0 FE2 J:SF4201 2.6 57.3 1.0 FE4 J:SF4201 2.6 57.3 1.0 FE1 J:SF4201 2.7 57.3 1.0 SG J:CYS35 3.0 54.7 1.0 S3 J:SF4201 3.8 57.3 1.0 OD1 L:ASN151 4.3 54.8 1.0 CB J:CYS35 4.6 54.7 1.0 SG J:CYS132 4.8 47.5 1.0 CA J:GLY37 4.8 51.2 1.0 N J:GLY37 4.8 51.2 1.0 CG L:ARG66 4.9 47.9 1.0 N J:CYS35 5.0 54.7 1.0

Iron binding site 4 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ J:Fe201 b:57.3 occ:1.00 FE4 J:SF4201 0.0 57.3 1.0 S3 J:SF4201 2.2 57.3 1.0 S1 J:SF4201 2.3 57.3 1.0 S2 J:SF4201 2.3 57.3 1.0 FE3 J:SF4201 2.6 57.3 1.0 FE2 J:SF4201 2.6 57.3 1.0 FE1 J:SF4201 2.7 57.3 1.0 SG J:CYS38 3.0 46.5 1.0 S4 J:SF4201 3.8 57.3 1.0 N J:CYS38 4.1 46.5 1.0 CB J:CYS38 4.1 46.5 1.0 CB J:PRO133 4.5 46.7 1.0 C J:GLY37 4.6 51.2 1.0 CA J:CYS38 4.6 46.5 1.0 CA J:GLY37 4.7 51.2 1.0 OG J:SER34 4.8 55.4 1.0 CA J:PRO133 4.8 46.7 1.0 N J:GLY37 4.9 51.2 1.0

Iron binding site 5 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe401 b:82.0 occ:1.00 FE L:NFU401 0.0 82.0 1.0 C1 L:NFU401 1.8 82.0 1.0 C2 L:NFU401 1.8 82.0 1.0 C3 L:NFU401 1.9 82.0 1.0 NI L:NFU401 2.6 82.0 1.0 SG L:CYS71 2.7 60.3 1.0 O3 L:NFU401 2.7 82.0 1.0 SG L:CYS377 3.0 75.5 1.0 N1 L:NFU401 3.0 82.0 1.0 N2 L:NFU401 3.0 82.0 1.0 CB L:CYS377 3.9 75.5 1.0 NH1 L:ARG320 4.2 66.8 1.0 CB L:CYS71 4.2 60.3 1.0 CD L:PRO344 4.4 71.9 1.0 CB L:CYS374 4.4 75.2 1.0 SG L:CYS374 4.4 75.2 1.0 CG L:PRO344 4.5 71.9 1.0 SG L:CYS68 4.7 55.2 1.0 NE2 L:HIS75 4.8 52.5 1.0 O L:CYS374 4.9 75.2 1.0

Iron binding site 6 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe201 b:48.3 occ:1.00 FE1 N:SF4201 0.0 48.3 1.0 S2 N:SF4201 2.2 48.3 1.0 S3 N:SF4201 2.3 48.3 1.0 S4 N:SF4201 2.3 48.3 1.0 FE4 N:SF4201 2.6 48.3 1.0 FE3 N:SF4201 2.6 48.3 1.0 FE2 N:SF4201 2.7 48.3 1.0 SG N:CYS77 3.0 41.0 1.0 S1 N:SF4201 3.8 48.3 1.0 CB N:CYS77 3.8 41.0 1.0 CA N:CYS77 4.4 41.0 1.0 N N:VAL78 4.6 40.0 1.0 N N:MET79 4.6 49.2 1.0 CG N:LEU39 4.8 62.4 1.0

Iron binding site 7 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe201 b:48.3 occ:1.00 FE2 N:SF4201 0.0 48.3 1.0 S1 N:SF4201 2.2 48.3 1.0 S4 N:SF4201 2.3 48.3 1.0 S3 N:SF4201 2.3 48.3 1.0 FE3 N:SF4201 2.6 48.3 1.0 FE1 N:SF4201 2.7 48.3 1.0 FE4 N:SF4201 2.7 48.3 1.0 CB N:CYS83 3.5 55.0 1.0 N N:CYS83 3.5 55.0 1.0 SG N:CYS83 3.6 55.0 1.0 S2 N:SF4201 3.8 48.3 1.0 CA N:CYS83 4.1 55.0 1.0 N N:GLN82 4.2 51.4 1.0 N N:LYS81 4.2 52.3 1.0 SG N:CYS80 4.2 47.8 1.0 C N:LYS81 4.5 52.3 1.0 C N:GLN82 4.5 51.4 1.0 CA N:LYS81 4.6 52.3 1.0 CA N:GLN82 4.8 51.4 1.0 N N:CYS80 4.8 47.8 1.0 C N:CYS80 4.9 47.8 1.0

Iron binding site 8 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe201 b:48.3 occ:1.00 FE3 N:SF4201 0.0 48.3 1.0 S4 N:SF4201 2.2 48.3 1.0 S2 N:SF4201 2.3 48.3 1.0 S1 N:SF4201 2.3 48.3 1.0 FE2 N:SF4201 2.6 48.3 1.0 FE1 N:SF4201 2.6 48.3 1.0 FE4 N:SF4201 2.7 48.3 1.0 SG N:CYS56 3.0 42.5 1.0 SG N:CYS83 3.6 55.0 1.0 S3 N:SF4201 3.8 48.3 1.0 CB N:CYS56 4.0 42.5 1.0 CG2 N:VAL60 4.0 46.3 1.0 CB N:CYS83 4.5 55.0 1.0 CE2 N:PHE61 4.5 50.5 1.0 CA N:CYS56 4.7 42.5 1.0 O N:ALA58 4.9 41.8 1.0 CZ N:PHE61 4.9 50.5 1.0 CD2 N:PHE61 5.0 50.5 1.0

Iron binding site 9 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe201 b:48.3 occ:1.00 FE4 N:SF4201 0.0 48.3 1.0 S3 N:SF4201 2.2 48.3 1.0 S1 N:SF4201 2.3 48.3 1.0 S2 N:SF4201 2.3 48.3 1.0 FE1 N:SF4201 2.6 48.3 1.0 FE2 N:SF4201 2.7 48.3 1.0 FE3 N:SF4201 2.7 48.3 1.0 SG N:CYS80 3.1 47.8 1.0 S4 N:SF4201 3.9 48.3 1.0 CG2 N:VAL78 4.1 40.0 1.0 N N:CYS80 4.1 47.8 1.0 CD N:PRO57 4.3 40.0 1.0 SG N:CYS56 4.4 42.5 1.0 CB N:CYS80 4.4 47.8 1.0 N N:VAL78 4.5 40.0 1.0 SG N:CYS77 4.5 41.0 1.0 N N:MET79 4.5 49.2 1.0 CG N:PRO57 4.7 40.0 1.0 CA N:CYS80 4.7 47.8 1.0 N N:LYS81 4.9 52.3 1.0

Iron binding site 10 out of 13 in the Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryoem Structure of A Respiratory Membrane-Bound Hydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe202 b:82.9 occ:1.00 FE1 N:SF4202 0.0 82.9 1.0 S2 N:SF4202 2.2 82.9 1.0 S4 N:SF4202 2.3 82.9 1.0 S3 N:SF4202 2.3 82.9 1.0 FE4 N:SF4202 2.7 82.9 1.0 FE2 N:SF4202 2.7 82.9 1.0 FE3 N:SF4202 2.7 82.9 1.0 SG N:CYS87 3.1 63.9 1.0 CB N:CYS87 3.8 63.9 1.0 S1 N:SF4202 3.8 82.9 1.0 SG N:CYS52 3.9 59.5 1.0 CD N:PRO88 4.0 67.2 1.0 CA N:CYS87 4.1 63.9 1.0 SG N:CYS49 4.1 76.2 1.0 N N:PRO88 4.8 67.2 1.0 C N:CYS87 4.9 63.9 1.0 CG N:PRO88 5.0 67.2 1.0

H.Yu, C.H.Wu, G.J.Schut, D.K.Haja, G.Zhao, J.W.Peters, M.W.W.Adams, H.Li. Structure of An Ancient Respiratory System. Cell V. 173 1636 2018.
ISSN: ISSN 1097-4172
PubMed: 29754813
DOI: 10.1016/J.CELL.2018.03.071