Iron in PDB 6cio: Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound

The structure of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound, PDB code: 6cio was solved by P.Y.-T.Chen, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.45 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	340.389, 107.095, 239.562, 90.00, 109.67, 90.00
R / Rfree (%)	20.7 / 24.1

The structure of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Iron atom in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound (pdb code 6cio). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 72 binding sites of Iron where determined in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound, PDB code: 6cio:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1201 b:0.1 occ:1.00 FE1 A:SF41201 0.0 0.1 1.0 S4 A:SF41201 2.3 1.0 1.0 S2 A:SF41201 2.3 83.2 1.0 SG A:CYS686 2.3 0.4 1.0 S3 A:SF41201 2.3 88.5 1.0 FE3 A:SF41201 2.7 0.9 1.0 FE4 A:SF41201 2.7 0.1 1.0 FE2 A:SF41201 2.7 0.2 1.0 CB A:CYS686 3.4 0.2 1.0 NE1 A:TRP681 3.7 95.4 1.0 CA A:CYS686 3.8 0.9 1.0 S1 A:SF41201 3.9 0.7 1.0 N A:GLN688 4.1 0.7 1.0 CG1 A:ILE735 4.1 80.1 1.0 N A:ILE687 4.2 0.7 1.0 CB A:ALA758 4.4 0.8 1.0 C A:CYS686 4.4 0.6 1.0 CD1 A:TRP681 4.5 96.0 1.0 CA A:GLN688 4.6 0.8 1.0 N A:CYS689 4.6 0.3 1.0 CD1 A:ILE735 4.8 84.7 1.0 CE2 A:TRP681 4.8 97.8 1.0 SG A:CYS752 4.8 0.2 1.0 SG A:CYS692 4.8 0.7 1.0 SG A:CYS689 4.9 0.3 1.0

Iron binding site 2 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1201 b:0.2 occ:1.00 FE2 A:SF41201 0.0 0.2 1.0 S1 A:SF41201 2.3 0.7 1.0 S3 A:SF41201 2.3 88.5 1.0 S4 A:SF41201 2.3 1.0 1.0 SG A:CYS689 2.3 0.3 1.0 FE3 A:SF41201 2.7 0.9 1.0 FE1 A:SF41201 2.7 0.1 1.0 FE4 A:SF41201 2.7 0.1 1.0 CB A:CYS689 3.6 0.4 1.0 N A:CYS689 3.6 0.3 1.0 N A:ASN690 3.8 0.8 1.0 S2 A:SF41201 3.9 83.2 1.0 CA A:CYS689 4.0 0.8 1.0 C A:CYS689 4.1 0.8 1.0 N A:GLN691 4.3 0.1 1.0 CD A:PRO753 4.4 0.1 1.0 SG A:CYS692 4.7 0.7 1.0 SG A:CYS752 4.7 0.2 1.0 CA A:ASN690 4.7 99.7 1.0 N A:GLN688 4.7 0.7 1.0 SG A:CYS686 4.7 0.4 1.0 CG1 A:ILE687 4.7 0.7 1.0 C A:GLN688 4.8 0.0 1.0 N A:CYS692 4.9 0.6 1.0 C A:ASN690 5.0 99.5 1.0

Iron binding site 3 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1201 b:0.9 occ:1.00 FE3 A:SF41201 0.0 0.9 1.0 S4 A:SF41201 2.3 1.0 1.0 S1 A:SF41201 2.3 0.7 1.0 S2 A:SF41201 2.3 83.2 1.0 SG A:CYS692 2.3 0.7 1.0 FE1 A:SF41201 2.7 0.1 1.0 FE2 A:SF41201 2.7 0.2 1.0 FE4 A:SF41201 2.7 0.1 1.0 CB A:CYS692 3.3 0.1 1.0 S3 A:SF41201 3.9 88.5 1.0 N A:CYS692 4.0 0.6 1.0 CG1 A:ILE735 4.3 80.1 1.0 CD1 A:ILE735 4.3 84.7 1.0 CA A:CYS692 4.3 0.4 1.0 CD1 A:LEU759 4.4 80.3 1.0 CG2 A:ILE735 4.5 76.8 1.0 N A:ASN690 4.6 0.8 1.0 SG A:CYS689 4.7 0.3 1.0 N A:GLN691 4.8 0.1 1.0 SG A:CYS686 4.8 0.4 1.0 CG A:LEU759 4.8 83.2 1.0 CA A:ASN690 4.8 99.7 1.0 SG A:CYS752 4.8 0.2 1.0 CB A:ILE735 5.0 78.9 1.0

Iron binding site 4 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1201 b:0.1 occ:1.00 FE4 A:SF41201 0.0 0.1 1.0 S1 A:SF41201 2.3 0.7 1.0 S3 A:SF41201 2.3 88.5 1.0 S2 A:SF41201 2.3 83.2 1.0 SG A:CYS752 2.3 0.2 1.0 FE1 A:SF41201 2.7 0.1 1.0 FE2 A:SF41201 2.7 0.2 1.0 FE3 A:SF41201 2.7 0.9 1.0 CB A:CYS752 3.4 99.9 1.0 CB A:ALA758 3.8 0.8 1.0 S4 A:SF41201 3.9 1.0 1.0 CA A:CYS752 3.9 98.2 1.0 CD A:PRO753 4.5 0.1 1.0 CG A:LEU759 4.6 83.2 1.0 SG A:CYS689 4.7 0.3 1.0 CD1 A:LEU759 4.7 80.3 1.0 C A:CYS752 4.7 0.2 1.0 CA A:ALA758 4.8 0.1 1.0 SG A:CYS692 4.8 0.7 1.0 SG A:CYS686 4.8 0.4 1.0 N A:PRO753 4.9 0.5 1.0 N A:ALA758 4.9 0.9 1.0 C A:ALA758 5.0 0.8 1.0

Iron binding site 5 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1202 b:68.3 occ:1.00 FE1 A:SF41202 0.0 68.3 1.0 S4 A:SF41202 2.3 60.7 1.0 S3 A:SF41202 2.3 65.5 1.0 S2 A:SF41202 2.3 66.3 1.0 SG A:CYS696 2.3 82.2 1.0 FE3 A:SF41202 2.7 72.3 1.0 FE2 A:SF41202 2.7 63.8 1.0 FE4 A:SF41202 2.7 67.2 1.0 CB A:CYS696 3.4 81.5 1.0 S1 A:SF41202 3.9 66.5 1.0 CB A:ALA700 3.9 67.6 1.0 CA A:CYS696 4.0 83.3 1.0 CG2 A:ILE701 4.2 79.9 1.0 CD A:PRO697 4.4 82.3 1.0 N A:ALA700 4.4 66.8 1.0 CA A:ALA700 4.6 67.8 1.0 C A:CYS696 4.7 80.6 1.0 N A:ILE701 4.7 76.4 1.0 SG A:CYS745 4.7 99.6 1.0 N A:PRO697 4.7 81.8 1.0 SG A:CYS748 4.8 79.6 1.0 C A:ALA700 4.8 75.5 1.0 CB A:ILE701 4.9 80.4 1.0 SG A:CYS742 4.9 83.9 1.0 N A:HIS698 4.9 76.0 1.0

Iron binding site 6 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1202 b:63.8 occ:1.00 FE2 A:SF41202 0.0 63.8 1.0 SG A:CYS742 2.3 83.9 1.0 S3 A:SF41202 2.3 65.5 1.0 S4 A:SF41202 2.3 60.7 1.0 S1 A:SF41202 2.3 66.5 1.0 FE1 A:SF41202 2.7 68.3 1.0 FE4 A:SF41202 2.7 67.2 1.0 FE3 A:SF41202 2.7 72.3 1.0 CB A:CYS742 3.3 78.1 1.0 N A:THR743 3.8 65.8 1.0 CA A:CYS742 3.8 72.8 1.0 S2 A:SF41202 3.9 66.3 1.0 N A:GLY744 4.0 78.3 1.0 CD A:PRO679 4.1 79.2 1.0 C A:CYS742 4.3 68.0 1.0 CB A:ALA700 4.3 67.6 1.0 CG A:PRO679 4.6 78.4 1.0 OG1 A:THR743 4.7 76.1 1.0 N A:CYS745 4.7 84.9 1.0 CA A:GLY744 4.7 83.9 1.0 CA A:THR743 4.8 68.2 1.0 SG A:CYS748 4.8 79.6 1.0 CG2 A:VAL737 4.8 82.8 1.0 SG A:CYS696 4.9 82.2 1.0 C A:THR743 4.9 73.1 1.0 SG A:CYS745 4.9 99.6 1.0

Iron binding site 7 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1202 b:72.3 occ:1.00 FE3 A:SF41202 0.0 72.3 1.0 S2 A:SF41202 2.3 66.3 1.0 S4 A:SF41202 2.3 60.7 1.0 S1 A:SF41202 2.3 66.5 1.0 SG A:CYS745 2.3 99.6 1.0 FE1 A:SF41202 2.7 68.3 1.0 FE4 A:SF41202 2.7 67.2 1.0 FE2 A:SF41202 2.7 63.8 1.0 CB A:CYS745 3.6 92.0 1.0 N A:CYS745 3.7 84.9 1.0 N A:GLY746 3.7 0.4 1.0 S3 A:SF41202 3.9 65.5 1.0 CA A:CYS745 4.1 86.5 1.0 OG1 A:THR743 4.2 76.1 1.0 N A:ASN747 4.2 93.7 1.0 C A:CYS745 4.3 86.6 1.0 CD A:PRO697 4.4 82.3 1.0 N A:GLY744 4.7 78.3 1.0 CA A:GLY746 4.7 70.1 1.0 SG A:CYS742 4.7 83.9 1.0 SG A:CYS748 4.7 79.6 1.0 SG A:CYS696 4.7 82.2 1.0 C A:GLY744 4.8 83.5 1.0 CG A:PRO697 4.8 80.2 1.0 N A:CYS748 4.9 94.8 1.0 CB A:ASN747 4.9 91.6 1.0 C A:GLY746 4.9 0.5 1.0

Iron binding site 8 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1202 b:67.2 occ:1.00 FE4 A:SF41202 0.0 67.2 1.0 S2 A:SF41202 2.3 66.3 1.0 S1 A:SF41202 2.3 66.5 1.0 SG A:CYS748 2.3 79.6 1.0 S3 A:SF41202 2.3 65.5 1.0 FE3 A:SF41202 2.7 72.3 1.0 FE1 A:SF41202 2.7 68.3 1.0 FE2 A:SF41202 2.7 63.8 1.0 CB A:CYS748 3.4 81.6 1.0 S4 A:SF41202 3.9 60.7 1.0 CG A:PRO679 4.0 78.4 1.0 N A:CYS748 4.0 94.8 1.0 CA A:CYS748 4.3 88.5 1.0 CD A:PRO679 4.3 79.2 1.0 CG2 A:ILE701 4.3 79.9 1.0 CE A:MET761 4.6 89.1 1.0 SG A:CYS742 4.7 83.9 1.0 SG A:CYS745 4.7 99.6 1.0 CB A:PRO679 4.7 82.6 1.0 SG A:CYS696 4.7 82.2 1.0 N A:ASN747 4.8 93.7 1.0 CB A:ILE701 4.9 80.4 1.0 N A:GLY746 4.9 0.4 1.0

Iron binding site 9 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1203 b:71.9 occ:1.00 FE1 A:SF41203 0.0 71.9 1.0 SG A:CYS809 2.3 91.6 1.0 S2 A:SF41203 2.3 78.8 1.0 S4 A:SF41203 2.3 47.4 1.0 S3 A:SF41203 2.3 72.0 1.0 FE2 A:SF41203 2.7 65.9 1.0 FE4 A:SF41203 2.7 79.5 1.0 FE3 A:SF41203 2.7 76.4 1.0 CB A:CYS809 3.1 85.0 1.0 N A:CYS809 3.7 65.6 1.0 S1 A:SF41203 3.9 74.2 1.0 CD A:LYS456 4.0 74.6 1.0 CA A:CYS809 4.0 76.1 1.0 CD1 A:ILE1076 4.4 72.5 1.0 CG1 A:ILE1076 4.5 69.1 1.0 SG A:CYS812 4.7 77.8 1.0 SG A:CYS1075 4.7 84.5 1.0 CE A:LYS456 4.8 72.4 1.0 CG2 A:ILE1076 4.8 70.1 1.0 C A:ALA808 4.8 65.2 1.0 SG A:CYS837 4.8 57.0 1.0 CB A:CYS812 4.9 78.0 1.0

Iron binding site 10 out of 72 in the Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Pyruvate:Ferredoxin Oxidoreductase From Moorella Thermoacetica with Lactyl-Tpp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1203 b:65.9 occ:1.00 FE2 A:SF41203 0.0 65.9 1.0 SG A:CYS812 2.3 77.8 1.0 S4 A:SF41203 2.3 47.4 1.0 S3 A:SF41203 2.3 72.0 1.0 S1 A:SF41203 2.3 74.2 1.0 FE1 A:SF41203 2.7 71.9 1.0 FE3 A:SF41203 2.7 76.4 1.0 FE4 A:SF41203 2.7 79.5 1.0 CB A:CYS812 3.2 78.0 1.0 S2 A:SF41203 3.9 78.8 1.0 CA A:CYS812 4.0 80.7 1.0 N A:CYS809 4.5 65.6 1.0 CB A:ALA808 4.5 53.2 1.0 N A:GLY813 4.6 80.2 1.0 SG A:CYS809 4.7 91.6 1.0 C A:CYS812 4.7 81.1 1.0 CB A:CYS809 4.8 85.0 1.0 OE1 A:GLU814 4.8 68.6 1.0 CG A:GLU814 4.8 70.3 1.0 CD A:GLU814 4.8 69.9 1.0 SG A:CYS837 4.8 57.0 1.0 CB A:GLU814 4.9 66.8 1.0 SG A:CYS1075 4.9 84.5 1.0 NE1 A:TRP841 5.0 62.2 1.0 N A:GLU814 5.0 66.5 1.0

P.Y.Chen, H.Aman, M.Can, S.W.Ragsdale, C.L.Drennan. Binding Site For Coenzyme A Revealed in the Structure of Pyruvate:Ferredoxin Oxidoreductase Frommoorella Thermoacetica. Proc. Natl. Acad. Sci. V. 115 3846 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29581263
DOI: 10.1073/PNAS.1722329115