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Iron in PDB 6enk: The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B

Protein crystallography data

The structure of The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B, PDB code: 6enk was solved by J.H.Naismith, S.A.Mcmahon, G.L.Challis, N.Kadi, M.Oke, H.Liu, L.G.Carter, K.A.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.99 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.163, 58.055, 101.194, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 20.4

Other elements in 6enk:

The structure of The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B (pdb code 6enk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B, PDB code: 6enk:

Iron binding site 1 out of 1 in 6enk

Go back to Iron Binding Sites List in 6enk
Iron binding site 1 out of 1 in the The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The X-Ray Crystal Structure of Dese Bound to Desferrioxamine B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe404

b:16.2
occ:1.00
FE A:BJ5404 0.0 16.2 1.0
O21 A:BJ5404 2.0 19.6 1.0
O22 A:BJ5404 2.0 20.5 1.0
O11 A:BJ5404 2.0 21.7 1.0
O31 A:BJ5404 2.0 18.5 1.0
O12 A:BJ5404 2.0 19.1 1.0
O32 A:BJ5404 2.0 17.8 1.0
N11 A:BJ5404 2.6 22.8 1.0
N21 A:BJ5404 2.7 20.8 1.0
N31 A:BJ5404 2.7 16.7 1.0
C11 A:BJ5404 2.7 21.7 1.0
C21 A:BJ5404 2.7 19.5 1.0
C31 A:BJ5404 2.7 17.4 1.0
O A:HOH693 3.7 28.0 1.0
C39 A:BJ5404 4.0 24.7 1.0
NH2 A:ARG292 4.0 12.6 1.0
C19 A:BJ5404 4.1 21.4 1.0
O A:HOH570 4.1 24.9 1.0
C29 A:BJ5404 4.1 16.8 1.0
C12 A:BJ5404 4.1 25.3 1.0
C22 A:BJ5404 4.2 19.7 1.0
NH1 A:ARG292 4.2 13.8 1.0
C32 A:BJ5404 4.2 17.7 1.0
O A:HOH637 4.4 47.1 1.0
C27 A:BJ5404 4.6 17.0 1.0
N12 A:BJ5404 4.6 28.2 1.0
CZ A:ARG292 4.6 13.5 1.0
C18 A:BJ5404 4.6 22.1 1.0
N22 A:BJ5404 4.7 17.1 1.0
C13 A:BJ5404 4.7 27.2 1.0
C28 A:BJ5404 4.7 17.3 1.0
CH2 A:TRP150 4.8 15.2 1.0
C17 A:BJ5404 4.8 23.3 1.0
C40 A:BJ5404 4.8 28.1 1.0
C23 A:BJ5404 4.9 18.3 1.0
C41 A:BJ5404 4.9 32.9 1.0

Reference:

J.L.Ronan, N.Kadi, S.A.Mcmahon, J.H.Naismith, L.M.Alkhalaf, G.L.Challis. Desferrioxamine Biosynthesis: Diverse Hydroxamate Assembly By Substrate-Tolerant Acyl Transferase Desc. Philos. Trans. R. Soc. V. 373 2018LOND., B, Biol. Sci..
ISSN: ESSN 1471-2970
PubMed: 29685972
DOI: 10.1098/RSTB.2017.0068
Page generated: Tue Aug 6 17:27:24 2024

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