Iron in PDB 6eno: Double Cubane Cluster Oxidoreductase
Protein crystallography data
The structure of Double Cubane Cluster Oxidoreductase, PDB code: 6eno
was solved by
J.H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.46 /
1.64
|
Space group
|
P 65 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
80.591,
80.591,
217.428,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
17.2 /
21.3
|
Iron Binding Sites:
The binding sites of Iron atom in the Double Cubane Cluster Oxidoreductase
(pdb code 6eno). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Double Cubane Cluster Oxidoreductase, PDB code: 6eno:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 1 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:19.1
occ:1.00
|
FE1
|
A:BJ8501
|
0.0
|
19.1
|
1.0
|
S3
|
A:BJ8501
|
2.2
|
19.4
|
1.0
|
S4
|
A:BJ8501
|
2.2
|
20.2
|
1.0
|
S9
|
A:BJ8501
|
2.3
|
22.8
|
1.0
|
S2
|
A:BJ8501
|
2.3
|
18.3
|
1.0
|
FE2
|
A:BJ8501
|
2.7
|
20.8
|
1.0
|
FE4
|
A:BJ8501
|
2.7
|
19.5
|
1.0
|
FE3
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
HD13
|
A:LEU115
|
3.5
|
25.8
|
1.0
|
HZ2
|
A:LYS146
|
3.7
|
32.4
|
1.0
|
FE8
|
A:BJ8501
|
3.7
|
20.2
|
1.0
|
S1
|
A:BJ8501
|
3.8
|
20.3
|
1.0
|
HD2
|
A:LYS146
|
3.9
|
28.9
|
1.0
|
HD2
|
A:PRO283
|
4.0
|
28.2
|
1.0
|
HE3
|
A:LYS146
|
4.1
|
29.9
|
1.0
|
HD22
|
A:LEU115
|
4.3
|
27.0
|
1.0
|
CD1
|
A:LEU115
|
4.4
|
21.5
|
1.0
|
HG2
|
A:PRO283
|
4.4
|
24.3
|
1.0
|
HG22
|
A:THR282
|
4.5
|
26.1
|
1.0
|
NZ
|
A:LYS146
|
4.5
|
27.0
|
1.0
|
S7
|
A:BJ8501
|
4.6
|
20.2
|
1.0
|
CE
|
A:LYS146
|
4.6
|
24.9
|
1.0
|
HD11
|
A:LEU115
|
4.6
|
25.8
|
1.0
|
S6
|
A:BJ8501
|
4.7
|
20.1
|
1.0
|
CD
|
A:PRO283
|
4.7
|
23.5
|
1.0
|
CD
|
A:LYS146
|
4.7
|
24.1
|
1.0
|
HZ1
|
A:LYS146
|
4.7
|
32.4
|
1.0
|
HG3
|
A:PRO283
|
4.8
|
24.3
|
1.0
|
SG
|
A:CYS143
|
4.8
|
18.9
|
1.0
|
HB
|
A:THR282
|
4.8
|
29.7
|
1.0
|
HB3
|
A:LEU115
|
4.8
|
25.9
|
1.0
|
CG
|
A:PRO283
|
4.8
|
20.2
|
1.0
|
HD12
|
A:LEU115
|
4.9
|
25.8
|
1.0
|
SG
|
A:CYS113
|
4.9
|
22.8
|
1.0
|
HD12
|
A:LEU370
|
4.9
|
26.8
|
1.0
|
HG21
|
A:THR282
|
4.9
|
26.1
|
1.0
|
HD3
|
A:PRO283
|
4.9
|
28.2
|
1.0
|
SG
|
A:CYS373
|
5.0
|
20.7
|
1.0
|
|
Iron binding site 2 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 2 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:20.8
occ:1.00
|
FE2
|
A:BJ8501
|
0.0
|
20.8
|
1.0
|
S4
|
A:BJ8501
|
2.2
|
20.2
|
1.0
|
S3
|
A:BJ8501
|
2.2
|
19.4
|
1.0
|
S1
|
A:BJ8501
|
2.3
|
20.3
|
1.0
|
SG
|
A:CYS113
|
2.4
|
22.8
|
1.0
|
FE3
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
FE4
|
A:BJ8501
|
2.7
|
19.5
|
1.0
|
FE1
|
A:BJ8501
|
2.7
|
19.1
|
1.0
|
HB2
|
A:CYS113
|
3.1
|
30.1
|
1.0
|
CB
|
A:CYS113
|
3.2
|
25.1
|
1.0
|
HB3
|
A:CYS113
|
3.3
|
30.1
|
1.0
|
HB3
|
A:LEU115
|
3.5
|
25.9
|
1.0
|
HB2
|
A:CYS373
|
3.5
|
32.2
|
1.0
|
HD12
|
A:LEU370
|
3.7
|
26.8
|
1.0
|
HD13
|
A:LEU115
|
3.8
|
25.8
|
1.0
|
HG13
|
A:ILE116
|
3.8
|
24.6
|
1.0
|
HD11
|
A:ILE116
|
3.9
|
26.5
|
1.0
|
S2
|
A:BJ8501
|
3.9
|
18.3
|
1.0
|
HD22
|
A:LEU115
|
4.2
|
27.0
|
1.0
|
HB2
|
A:LEU115
|
4.3
|
25.9
|
1.0
|
CB
|
A:LEU115
|
4.3
|
21.6
|
1.0
|
CB
|
A:CYS373
|
4.3
|
26.9
|
1.0
|
HB2
|
A:LEU370
|
4.4
|
34.2
|
1.0
|
CD1
|
A:ILE116
|
4.5
|
22.1
|
1.0
|
CG1
|
A:ILE116
|
4.5
|
20.5
|
1.0
|
HA
|
A:CYS373
|
4.5
|
24.6
|
1.0
|
HD12
|
A:ILE116
|
4.5
|
26.5
|
1.0
|
SG
|
A:CYS373
|
4.6
|
20.7
|
1.0
|
CD1
|
A:LEU370
|
4.6
|
22.3
|
1.0
|
CD1
|
A:LEU115
|
4.6
|
21.5
|
1.0
|
CA
|
A:CYS113
|
4.6
|
22.1
|
1.0
|
H
|
A:LEU115
|
4.7
|
23.0
|
1.0
|
S9
|
A:BJ8501
|
4.7
|
22.8
|
1.0
|
H
|
A:ILE116
|
4.7
|
24.8
|
1.0
|
HD13
|
A:LEU370
|
4.8
|
26.8
|
1.0
|
HG12
|
A:ILE116
|
4.8
|
24.6
|
1.0
|
HG21
|
A:THR282
|
4.8
|
26.1
|
1.0
|
SG
|
A:CYS143
|
4.8
|
18.9
|
1.0
|
HA
|
A:CYS113
|
4.9
|
26.5
|
1.0
|
CG
|
A:LEU115
|
4.9
|
22.6
|
1.0
|
HD12
|
A:LEU115
|
4.9
|
25.8
|
1.0
|
HD2
|
A:LYS146
|
5.0
|
28.9
|
1.0
|
CA
|
A:CYS373
|
5.0
|
20.5
|
1.0
|
CD2
|
A:LEU115
|
5.0
|
22.5
|
1.0
|
|
Iron binding site 3 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 3 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:20.5
occ:1.00
|
FE3
|
A:BJ8501
|
0.0
|
20.5
|
1.0
|
S1
|
A:BJ8501
|
2.2
|
20.3
|
1.0
|
S4
|
A:BJ8501
|
2.3
|
20.2
|
1.0
|
S2
|
A:BJ8501
|
2.3
|
18.3
|
1.0
|
SG
|
A:CYS373
|
2.3
|
20.7
|
1.0
|
FE2
|
A:BJ8501
|
2.7
|
20.8
|
1.0
|
FE4
|
A:BJ8501
|
2.7
|
19.5
|
1.0
|
FE1
|
A:BJ8501
|
2.7
|
19.1
|
1.0
|
HB2
|
A:CYS373
|
2.8
|
32.2
|
1.0
|
CB
|
A:CYS373
|
3.1
|
26.9
|
1.0
|
HG22
|
A:THR282
|
3.5
|
26.1
|
1.0
|
HG21
|
A:THR282
|
3.5
|
26.1
|
1.0
|
HD2
|
A:TYR376
|
3.6
|
25.0
|
1.0
|
HA
|
A:CYS373
|
3.7
|
24.6
|
1.0
|
S3
|
A:BJ8501
|
3.8
|
19.4
|
1.0
|
HB3
|
A:CYS373
|
3.9
|
32.2
|
1.0
|
HD2
|
A:PRO375
|
3.9
|
23.6
|
1.0
|
CG2
|
A:THR282
|
4.0
|
21.7
|
1.0
|
CA
|
A:CYS373
|
4.0
|
20.5
|
1.0
|
HB3
|
A:CYS143
|
4.3
|
23.5
|
1.0
|
CD2
|
A:TYR376
|
4.4
|
20.8
|
1.0
|
HE2
|
A:TYR376
|
4.5
|
24.4
|
1.0
|
SG
|
A:CYS113
|
4.6
|
22.8
|
1.0
|
HG23
|
A:THR282
|
4.6
|
26.1
|
1.0
|
HB2
|
A:CYS113
|
4.7
|
30.1
|
1.0
|
HB
|
A:THR282
|
4.7
|
29.7
|
1.0
|
H
|
A:TYR376
|
4.8
|
23.3
|
1.0
|
C
|
A:CYS373
|
4.8
|
22.8
|
1.0
|
HB2
|
A:TYR376
|
4.8
|
25.1
|
1.0
|
SG
|
A:CYS143
|
4.8
|
18.9
|
1.0
|
HG2
|
A:PRO375
|
4.9
|
20.2
|
1.0
|
S9
|
A:BJ8501
|
4.9
|
22.8
|
1.0
|
CE2
|
A:TYR376
|
4.9
|
20.3
|
1.0
|
CD
|
A:PRO375
|
4.9
|
19.7
|
1.0
|
HB2
|
A:PRO375
|
4.9
|
21.1
|
1.0
|
CB
|
A:CYS143
|
4.9
|
19.6
|
1.0
|
HB2
|
A:LEU370
|
4.9
|
34.2
|
1.0
|
HB2
|
A:CYS143
|
5.0
|
23.5
|
1.0
|
|
Iron binding site 4 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 4 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:19.5
occ:1.00
|
FE4
|
A:BJ8501
|
0.0
|
19.5
|
1.0
|
S1
|
A:BJ8501
|
2.2
|
20.3
|
1.0
|
S3
|
A:BJ8501
|
2.3
|
19.4
|
1.0
|
SG
|
A:CYS143
|
2.3
|
18.9
|
1.0
|
S2
|
A:BJ8501
|
2.4
|
18.3
|
1.0
|
FE2
|
A:BJ8501
|
2.7
|
20.8
|
1.0
|
FE1
|
A:BJ8501
|
2.7
|
19.1
|
1.0
|
FE3
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
HB3
|
A:CYS143
|
3.0
|
23.5
|
1.0
|
HD2
|
A:LYS146
|
3.2
|
28.9
|
1.0
|
CB
|
A:CYS143
|
3.2
|
19.6
|
1.0
|
HD11
|
A:ILE116
|
3.3
|
26.5
|
1.0
|
HB2
|
A:CYS143
|
3.5
|
23.5
|
1.0
|
S4
|
A:BJ8501
|
3.8
|
20.2
|
1.0
|
HG3
|
A:LYS146
|
3.9
|
28.1
|
1.0
|
O
|
A:HOH859
|
4.0
|
22.4
|
1.0
|
CD
|
A:LYS146
|
4.1
|
24.1
|
1.0
|
CD1
|
A:ILE116
|
4.3
|
22.1
|
1.0
|
H
|
A:CYS143
|
4.3
|
24.8
|
1.0
|
HB2
|
A:CYS113
|
4.4
|
30.1
|
1.0
|
CG
|
A:LYS146
|
4.5
|
23.4
|
1.0
|
HE3
|
A:LYS146
|
4.5
|
29.9
|
1.0
|
CA
|
A:CYS143
|
4.6
|
21.2
|
1.0
|
H
|
A:LYS146
|
4.6
|
21.4
|
1.0
|
HG13
|
A:ILE116
|
4.6
|
24.6
|
1.0
|
HD12
|
A:ILE116
|
4.6
|
26.5
|
1.0
|
HB3
|
A:CYS113
|
4.6
|
30.1
|
1.0
|
HZ2
|
A:LYS146
|
4.6
|
32.4
|
1.0
|
S9
|
A:BJ8501
|
4.6
|
22.8
|
1.0
|
HD3
|
A:LYS146
|
4.7
|
28.9
|
1.0
|
HB2
|
A:LYS146
|
4.7
|
20.8
|
1.0
|
SG
|
A:CYS373
|
4.8
|
20.7
|
1.0
|
HG12
|
A:ILE116
|
4.8
|
24.6
|
1.0
|
HA
|
A:CYS373
|
4.8
|
24.6
|
1.0
|
HB2
|
A:CYS373
|
4.8
|
32.2
|
1.0
|
CE
|
A:LYS146
|
4.8
|
24.9
|
1.0
|
SG
|
A:CYS113
|
4.8
|
22.8
|
1.0
|
HD13
|
A:ILE116
|
4.8
|
26.5
|
1.0
|
CG1
|
A:ILE116
|
4.8
|
20.5
|
1.0
|
CB
|
A:CYS113
|
4.8
|
25.1
|
1.0
|
N
|
A:CYS143
|
4.9
|
20.7
|
1.0
|
HD2
|
A:PRO375
|
4.9
|
23.6
|
1.0
|
|
Iron binding site 5 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 5 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:19.9
occ:1.00
|
FE5
|
A:BJ8501
|
0.0
|
19.9
|
1.0
|
S7
|
A:BJ8501
|
2.2
|
20.2
|
1.0
|
S6
|
A:BJ8501
|
2.3
|
20.1
|
1.0
|
S8
|
A:BJ8501
|
2.3
|
19.2
|
1.0
|
SG
|
A:CYS340
|
2.3
|
20.9
|
1.0
|
FE7
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
FE8
|
A:BJ8501
|
2.7
|
20.2
|
1.0
|
FE6
|
A:BJ8501
|
2.7
|
19.1
|
1.0
|
HB2
|
A:CYS340
|
3.1
|
31.2
|
1.0
|
CB
|
A:CYS340
|
3.4
|
26.0
|
1.0
|
HE2
|
A:TYR376
|
3.8
|
24.4
|
1.0
|
HB3
|
A:CYS340
|
3.9
|
31.2
|
1.0
|
S5
|
A:BJ8501
|
3.9
|
20.4
|
1.0
|
HG
|
A:CYS342
|
3.9
|
26.6
|
0.8
|
OH
|
A:TYR376
|
4.0
|
20.7
|
1.0
|
HG21
|
A:THR142
|
4.1
|
22.0
|
1.0
|
HG
|
A:CYS342
|
4.2
|
19.2
|
0.2
|
HA
|
A:CYS340
|
4.5
|
24.4
|
1.0
|
HB
|
A:THR142
|
4.6
|
19.4
|
1.0
|
CA
|
A:CYS340
|
4.6
|
20.4
|
1.0
|
HH
|
A:TYR376
|
4.6
|
24.9
|
1.0
|
CE2
|
A:TYR376
|
4.6
|
20.3
|
1.0
|
SG
|
A:CYS342
|
4.7
|
22.2
|
0.8
|
HH21
|
A:ARG312
|
4.7
|
28.6
|
1.0
|
SG
|
A:CYS308
|
4.7
|
21.5
|
1.0
|
HG22
|
A:THR142
|
4.7
|
22.0
|
1.0
|
S2
|
A:BJ8501
|
4.7
|
18.3
|
1.0
|
H
|
A:CYS342
|
4.7
|
22.0
|
0.8
|
H
|
A:CYS342
|
4.7
|
22.0
|
0.2
|
HB3
|
A:CYS342
|
4.8
|
21.8
|
0.2
|
S9
|
A:BJ8501
|
4.8
|
22.8
|
1.0
|
CG2
|
A:THR142
|
4.8
|
18.3
|
1.0
|
CZ
|
A:TYR376
|
4.8
|
24.9
|
1.0
|
SG
|
A:CYS75
|
4.9
|
18.3
|
1.0
|
HB2
|
A:CYS342
|
4.9
|
21.2
|
0.8
|
SG
|
A:CYS342
|
4.9
|
16.0
|
0.2
|
H
|
A:ALA341
|
4.9
|
24.5
|
1.0
|
|
Iron binding site 6 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 6 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:19.1
occ:1.00
|
FE6
|
A:BJ8501
|
0.0
|
19.1
|
1.0
|
S8
|
A:BJ8501
|
2.3
|
19.2
|
1.0
|
S5
|
A:BJ8501
|
2.3
|
20.4
|
1.0
|
S7
|
A:BJ8501
|
2.3
|
20.2
|
1.0
|
SG
|
A:CYS75
|
2.4
|
18.3
|
1.0
|
FE7
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
FE5
|
A:BJ8501
|
2.7
|
19.9
|
1.0
|
FE8
|
A:BJ8501
|
2.8
|
20.2
|
1.0
|
HA
|
A:CYS75
|
3.3
|
19.3
|
1.0
|
CB
|
A:CYS75
|
3.4
|
15.6
|
1.0
|
HG21
|
A:THR142
|
3.4
|
22.0
|
1.0
|
HB2
|
A:CYS75
|
3.4
|
18.8
|
1.0
|
H
|
A:VAL76
|
3.4
|
20.9
|
1.0
|
HG22
|
A:VAL76
|
3.6
|
25.4
|
1.0
|
CA
|
A:CYS75
|
3.8
|
16.1
|
1.0
|
HD1
|
A:TYR77
|
3.8
|
26.9
|
1.0
|
S6
|
A:BJ8501
|
3.9
|
20.1
|
1.0
|
N
|
A:VAL76
|
4.0
|
17.4
|
1.0
|
HZ2
|
A:LYS146
|
4.1
|
32.4
|
1.0
|
HZ3
|
A:LYS146
|
4.2
|
32.4
|
1.0
|
H
|
A:TYR77
|
4.2
|
19.7
|
1.0
|
HB3
|
A:CYS75
|
4.2
|
18.8
|
1.0
|
CG2
|
A:THR142
|
4.3
|
18.3
|
1.0
|
OE2
|
A:GLU140
|
4.4
|
23.4
|
1.0
|
C
|
A:CYS75
|
4.4
|
22.7
|
1.0
|
NZ
|
A:LYS146
|
4.5
|
27.0
|
1.0
|
HZ1
|
A:LYS146
|
4.5
|
32.4
|
1.0
|
CG2
|
A:VAL76
|
4.6
|
21.1
|
1.0
|
HG1
|
A:THR142
|
4.6
|
20.8
|
1.0
|
HG22
|
A:THR142
|
4.6
|
22.0
|
1.0
|
HG3
|
A:GLU140
|
4.6
|
33.4
|
1.0
|
HG13
|
A:VAL76
|
4.7
|
22.1
|
1.0
|
S9
|
A:BJ8501
|
4.7
|
22.8
|
1.0
|
CD1
|
A:TYR77
|
4.7
|
22.4
|
1.0
|
HB2
|
A:TYR77
|
4.7
|
19.6
|
1.0
|
SG
|
A:CYS308
|
4.7
|
21.5
|
1.0
|
HB2
|
A:CYS340
|
4.8
|
31.2
|
1.0
|
HG23
|
A:THR142
|
4.8
|
22.0
|
1.0
|
SG
|
A:CYS340
|
4.8
|
20.9
|
1.0
|
O
|
A:PHE74
|
4.9
|
23.4
|
1.0
|
HG23
|
A:VAL76
|
4.9
|
25.4
|
1.0
|
N
|
A:TYR77
|
5.0
|
16.4
|
1.0
|
|
Iron binding site 7 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 7 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:20.5
occ:1.00
|
FE7
|
A:BJ8501
|
0.0
|
20.5
|
1.0
|
S5
|
A:BJ8501
|
2.3
|
20.4
|
1.0
|
SG
|
A:CYS308
|
2.3
|
21.5
|
1.0
|
S8
|
A:BJ8501
|
2.3
|
19.2
|
1.0
|
S6
|
A:BJ8501
|
2.3
|
20.1
|
1.0
|
FE5
|
A:BJ8501
|
2.7
|
19.9
|
1.0
|
FE6
|
A:BJ8501
|
2.7
|
19.1
|
1.0
|
FE8
|
A:BJ8501
|
2.7
|
20.2
|
1.0
|
HB2
|
A:CYS308
|
3.0
|
22.2
|
1.0
|
CB
|
A:CYS308
|
3.2
|
18.5
|
1.0
|
HG22
|
A:VAL76
|
3.3
|
25.4
|
1.0
|
HB3
|
A:CYS308
|
3.4
|
22.2
|
1.0
|
HH21
|
A:ARG312
|
3.5
|
28.6
|
1.0
|
HE
|
A:ARG312
|
3.7
|
25.9
|
1.0
|
S7
|
A:BJ8501
|
3.8
|
20.2
|
1.0
|
HG13
|
A:VAL76
|
4.0
|
22.1
|
1.0
|
HB2
|
A:CYS340
|
4.0
|
31.2
|
1.0
|
H
|
A:VAL76
|
4.1
|
20.9
|
1.0
|
HG21
|
A:VAL76
|
4.1
|
25.4
|
1.0
|
CG2
|
A:VAL76
|
4.2
|
21.1
|
1.0
|
HG3
|
A:PRO283
|
4.3
|
24.3
|
1.0
|
NH2
|
A:ARG312
|
4.3
|
23.8
|
1.0
|
HG11
|
A:VAL338
|
4.3
|
23.7
|
1.0
|
HD3
|
A:PRO283
|
4.5
|
28.2
|
1.0
|
NE
|
A:ARG312
|
4.5
|
21.6
|
1.0
|
SG
|
A:CYS340
|
4.6
|
20.9
|
1.0
|
CA
|
A:CYS308
|
4.6
|
20.7
|
1.0
|
H
|
A:CYS308
|
4.6
|
24.9
|
1.0
|
HG11
|
A:VAL76
|
4.6
|
22.1
|
1.0
|
CG1
|
A:VAL76
|
4.7
|
18.4
|
1.0
|
S9
|
A:BJ8501
|
4.7
|
22.8
|
1.0
|
HA
|
A:CYS75
|
4.8
|
19.3
|
1.0
|
CB
|
A:CYS340
|
4.8
|
26.0
|
1.0
|
SG
|
A:CYS75
|
4.8
|
18.3
|
1.0
|
HG23
|
A:VAL76
|
4.8
|
25.4
|
1.0
|
OH
|
A:TYR376
|
4.8
|
20.7
|
1.0
|
HA
|
A:CYS308
|
4.9
|
24.9
|
1.0
|
N
|
A:VAL76
|
4.9
|
17.4
|
1.0
|
CZ
|
A:ARG312
|
4.9
|
25.6
|
1.0
|
HH22
|
A:ARG312
|
4.9
|
28.6
|
1.0
|
N
|
A:CYS308
|
5.0
|
20.7
|
1.0
|
CB
|
A:VAL76
|
5.0
|
19.6
|
1.0
|
HG12
|
A:VAL338
|
5.0
|
23.7
|
1.0
|
|
Iron binding site 8 out
of 8 in 6eno
Go back to
Iron Binding Sites List in 6eno
Iron binding site 8 out
of 8 in the Double Cubane Cluster Oxidoreductase
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Double Cubane Cluster Oxidoreductase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:20.2
occ:1.00
|
FE8
|
A:BJ8501
|
0.0
|
20.2
|
1.0
|
S9
|
A:BJ8501
|
2.2
|
22.8
|
1.0
|
S6
|
A:BJ8501
|
2.3
|
20.1
|
1.0
|
S7
|
A:BJ8501
|
2.3
|
20.2
|
1.0
|
S5
|
A:BJ8501
|
2.4
|
20.4
|
1.0
|
FE5
|
A:BJ8501
|
2.7
|
19.9
|
1.0
|
FE7
|
A:BJ8501
|
2.7
|
20.5
|
1.0
|
FE6
|
A:BJ8501
|
2.8
|
19.1
|
1.0
|
HZ2
|
A:LYS146
|
3.2
|
32.4
|
1.0
|
HG3
|
A:PRO283
|
3.6
|
24.3
|
1.0
|
FE1
|
A:BJ8501
|
3.7
|
19.1
|
1.0
|
NZ
|
A:LYS146
|
3.9
|
27.0
|
1.0
|
HZ1
|
A:LYS146
|
3.9
|
32.4
|
1.0
|
S8
|
A:BJ8501
|
4.0
|
19.2
|
1.0
|
HD3
|
A:PRO283
|
4.1
|
28.2
|
1.0
|
S2
|
A:BJ8501
|
4.2
|
18.3
|
1.0
|
HZ3
|
A:LYS146
|
4.2
|
32.4
|
1.0
|
CG
|
A:PRO283
|
4.3
|
20.2
|
1.0
|
HB2
|
A:CYS308
|
4.4
|
22.2
|
1.0
|
HA
|
A:CYS75
|
4.5
|
19.3
|
1.0
|
HD2
|
A:PRO283
|
4.5
|
28.2
|
1.0
|
CD
|
A:PRO283
|
4.5
|
23.5
|
1.0
|
HG2
|
A:PRO283
|
4.6
|
24.3
|
1.0
|
HE2
|
A:TYR376
|
4.8
|
24.4
|
1.0
|
HH21
|
A:ARG312
|
4.8
|
28.6
|
1.0
|
SG
|
A:CYS308
|
4.8
|
21.5
|
1.0
|
HG21
|
A:THR142
|
4.9
|
22.0
|
1.0
|
O
|
A:PHE74
|
4.9
|
23.4
|
1.0
|
SG
|
A:CYS75
|
4.9
|
18.3
|
1.0
|
SG
|
A:CYS340
|
4.9
|
20.9
|
1.0
|
HB2
|
A:CYS75
|
4.9
|
18.8
|
1.0
|
HG1
|
A:THR142
|
5.0
|
20.8
|
1.0
|
|
Reference:
J.H.Jeoung,
H.Dobbek.
Atp-Dependent Substrate Reduction at An [FE8S9] Double-Cubane Cluster. Proc. Natl. Acad. Sci. V. 115 2994 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29507223
DOI: 10.1073/PNAS.1720489115
Page generated: Tue Aug 6 17:27:30 2024
|