Iron in PDB 6et5: Reaction Centre Light Harvesting Complex 1 From Blc. Virids

The structure of Reaction Centre Light Harvesting Complex 1 From Blc. Virids also contains other interesting chemical elements:

Magnesium

(Mg)

38 atoms

The binding sites of Iron atom in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids (pdb code 6et5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids, PDB code: 6et5:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Reaction Centre Light Harvesting Complex 1 From Blc. Virids within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:0.5 occ:1.00 FE C:HEM401 0.0 0.5 1.0 ND C:HEM401 1.9 0.7 1.0 NA C:HEM401 2.0 0.1 1.0 NC C:HEM401 2.1 98.7 1.0 NB C:HEM401 2.1 0.9 1.0 NE2 C:HIS91 2.2 1.0 1.0 SD C:MET74 2.2 0.3 1.0 C4D C:HEM401 2.9 0.7 1.0 C1D C:HEM401 2.9 0.9 1.0 C1A C:HEM401 3.0 1.0 1.0 C4B C:HEM401 3.0 0.7 1.0 C4A C:HEM401 3.0 0.9 1.0 C1B C:HEM401 3.0 0.3 1.0 C4C C:HEM401 3.1 0.5 1.0 C1C C:HEM401 3.1 0.0 1.0 CD2 C:HIS91 3.1 0.5 1.0 CE1 C:HIS91 3.2 0.4 1.0 CHA C:HEM401 3.3 0.9 1.0 CHD C:HEM401 3.4 0.7 1.0 CHC C:HEM401 3.4 0.8 1.0 CE C:MET74 3.4 0.5 1.0 CHB C:HEM401 3.4 0.6 1.0 CG C:MET74 3.6 0.8 1.0 C3D C:HEM401 4.2 0.1 1.0 C2A C:HEM401 4.2 0.4 1.0 C2D C:HEM401 4.2 0.1 1.0 C3A C:HEM401 4.2 0.7 1.0 C2B C:HEM401 4.2 0.8 1.0 CG C:HIS91 4.2 0.3 1.0 C2C C:HEM401 4.3 0.7 1.0 C3B C:HEM401 4.3 0.6 1.0 C3C C:HEM401 4.3 0.8 1.0 ND1 C:HIS91 4.3 0.6 1.0 CB C:MET74 4.4 0.0 1.0

Iron binding site 2 out of 5 in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Reaction Centre Light Harvesting Complex 1 From Blc. Virids within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:87.3 occ:1.00 FE C:HEM402 0.0 87.3 1.0 ND C:HEM402 1.9 91.3 1.0 NA C:HEM402 2.0 93.9 1.0 NC C:HEM402 2.1 87.9 1.0 NE2 C:HIS136 2.1 84.7 1.0 NB C:HEM402 2.1 86.7 1.0 SD C:MET110 2.2 96.6 1.0 C1D C:HEM402 2.9 88.8 1.0 C4D C:HEM402 2.9 91.3 1.0 C1A C:HEM402 3.0 95.2 1.0 C4A C:HEM402 3.0 0.1 1.0 CE1 C:HIS136 3.0 95.4 1.0 C4C C:HEM402 3.0 87.7 1.0 C1B C:HEM402 3.0 93.5 1.0 C4B C:HEM402 3.1 87.8 1.0 C1C C:HEM402 3.1 94.7 1.0 CD2 C:HIS136 3.1 96.8 1.0 CHD C:HEM402 3.4 88.1 1.0 CHA C:HEM402 3.4 89.9 1.0 CE C:MET110 3.4 95.5 1.0 CHB C:HEM402 3.4 93.2 1.0 CHC C:HEM402 3.5 91.9 1.0 CG C:MET110 3.5 92.4 1.0 C2D C:HEM402 4.1 96.2 1.0 ND1 C:HIS136 4.1 92.1 1.0 C3D C:HEM402 4.2 0.6 1.0 C3A C:HEM402 4.2 0.8 1.0 C2A C:HEM402 4.2 0.8 1.0 CG C:HIS136 4.2 88.7 1.0 C3C C:HEM402 4.2 85.9 1.0 C2C C:HEM402 4.3 91.3 1.0 C2B C:HEM402 4.3 99.8 1.0 CB C:MET110 4.3 93.8 1.0 C3B C:HEM402 4.3 93.9 1.0

Iron binding site 3 out of 5 in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Reaction Centre Light Harvesting Complex 1 From Blc. Virids within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:66.5 occ:1.00 FE C:HEM403 0.0 66.5 1.0 ND C:HEM403 1.9 69.7 1.0 NA C:HEM403 2.0 70.6 1.0 SD C:MET233 2.0 66.8 1.0 NC C:HEM403 2.1 64.1 1.0 NB C:HEM403 2.1 62.1 1.0 NE2 C:HIS248 2.1 77.0 1.0 C4D C:HEM403 2.9 68.6 1.0 C1D C:HEM403 2.9 69.1 1.0 C1A C:HEM403 3.0 74.6 1.0 C4B C:HEM403 3.0 63.5 1.0 C1B C:HEM403 3.0 64.6 1.0 C4A C:HEM403 3.0 67.4 1.0 C4C C:HEM403 3.1 68.7 1.0 CD2 C:HIS248 3.1 80.1 1.0 C1C C:HEM403 3.1 67.9 1.0 CE1 C:HIS248 3.1 87.0 1.0 CG C:MET233 3.3 68.2 1.0 CHA C:HEM403 3.4 67.5 1.0 CE C:MET233 3.4 62.8 1.0 CHD C:HEM403 3.4 65.3 1.0 CHC C:HEM403 3.4 65.1 1.0 CHB C:HEM403 3.4 63.4 1.0 C3D C:HEM403 4.2 71.2 1.0 C2D C:HEM403 4.2 73.1 1.0 ND1 C:HIS248 4.2 92.9 1.0 C2A C:HEM403 4.2 75.5 1.0 CG C:HIS248 4.2 84.3 1.0 C3A C:HEM403 4.2 67.3 1.0 C3B C:HEM403 4.2 66.0 1.0 CB C:MET233 4.2 71.9 1.0 C2C C:HEM403 4.3 70.9 1.0 C2B C:HEM403 4.3 66.5 1.0 C3C C:HEM403 4.3 68.3 1.0

Iron binding site 4 out of 5 in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Reaction Centre Light Harvesting Complex 1 From Blc. Virids within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:69.9 occ:1.00 FE C:HEM404 0.0 69.9 1.0 ND C:HEM404 1.9 87.5 1.0 NE2 C:HIS124 2.0 74.3 1.0 NA C:HEM404 2.0 78.6 1.0 NE2 C:HIS309 2.0 74.4 1.0 NC C:HEM404 2.1 77.2 1.0 NB C:HEM404 2.1 77.5 1.0 CE1 C:HIS124 2.8 81.7 1.0 CE1 C:HIS309 2.9 82.0 1.0 C1D C:HEM404 2.9 90.0 1.0 C4D C:HEM404 2.9 84.9 1.0 C1A C:HEM404 3.0 82.0 1.0 C4A C:HEM404 3.0 77.5 1.0 C4B C:HEM404 3.0 75.7 1.0 C1B C:HEM404 3.0 76.8 1.0 C4C C:HEM404 3.0 80.5 1.0 C1C C:HEM404 3.1 81.0 1.0 CD2 C:HIS309 3.1 83.9 1.0 CD2 C:HIS124 3.1 80.8 1.0 CHA C:HEM404 3.4 81.9 1.0 CHD C:HEM404 3.4 83.7 1.0 CHB C:HEM404 3.4 71.7 1.0 CHC C:HEM404 3.4 72.3 1.0 ND1 C:HIS124 4.0 90.4 1.0 ND1 C:HIS309 4.0 80.4 1.0 CG C:HIS124 4.2 86.1 1.0 CG C:HIS309 4.2 84.6 1.0 C2D C:HEM404 4.2 87.7 1.0 C3A C:HEM404 4.2 85.8 1.0 C2A C:HEM404 4.2 86.6 1.0 C3D C:HEM404 4.2 89.6 1.0 C2C C:HEM404 4.2 83.6 1.0 C2B C:HEM404 4.3 81.3 1.0 C3B C:HEM404 4.3 85.0 1.0 C3C C:HEM404 4.3 81.0 1.0 CG C:PRO315 4.9 87.5 1.0

Iron binding site 5 out of 5 in the Reaction Centre Light Harvesting Complex 1 From Blc. Virids


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Reaction Centre Light Harvesting Complex 1 From Blc. Virids within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe305 b:79.4 occ:1.00 NE2 M:HIS217 2.0 81.5 1.0 OE2 M:GLU232 2.0 79.0 1.0 NE2 L:HIS190 2.1 81.7 1.0 NE2 L:HIS230 2.2 79.7 1.0 NE2 M:HIS264 2.2 80.1 1.0 OE1 M:GLU232 2.5 82.7 1.0 CD M:GLU232 2.6 87.7 1.0 CD2 M:HIS217 3.0 82.0 1.0 CE1 M:HIS217 3.0 85.7 1.0 CD2 L:HIS190 3.0 81.7 1.0 CE1 L:HIS230 3.1 84.3 1.0 CE1 M:HIS264 3.1 76.1 1.0 CE1 L:HIS190 3.1 82.2 1.0 CD2 M:HIS264 3.2 79.1 1.0 CD2 L:HIS230 3.2 82.9 1.0 ND1 M:HIS217 4.1 80.8 1.0 CG M:HIS217 4.1 77.4 1.0 CG M:GLU232 4.1 89.9 1.0 CG L:HIS190 4.2 83.3 1.0 ND1 L:HIS190 4.2 81.8 1.0 ND1 L:HIS230 4.2 80.8 1.0 ND1 M:HIS264 4.2 79.4 1.0 CG M:HIS264 4.3 76.6 1.0 CG L:HIS230 4.3 77.4 1.0 CG1 L:ILE194 4.7 93.5 1.0 CG1 M:ILE221 4.8 98.9 1.0

P.Qian, C.A.Siebert, P.Wang, D.P.Canniffe, C.N.Hunter. Cryo-Em Structure of the Blastochloris Viridis LH1-Rc Complex at 2.9 Angstrom. Nature V. 556 203 2018.
ISSN: ESSN 1476-4687
PubMed: 29618818
DOI: 10.1038/S41586-018-0014-5