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Iron in PDB 6fsk: F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus

Protein crystallography data

The structure of F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus, PDB code: 6fsk was solved by A.Romero, I.Davo-Siguero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.22 / 1.56
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.717, 117.575, 140.434, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.9

Iron Binding Sites:

The binding sites of Iron atom in the F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus (pdb code 6fsk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus, PDB code: 6fsk:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6fsk

Go back to Iron Binding Sites List in 6fsk
Iron binding site 1 out of 2 in the F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:9.0
occ:1.00
FE A:HEM501 0.0 9.0 1.0
NA A:HEM501 2.0 9.4 1.0
ND A:HEM501 2.0 8.4 1.0
NC A:HEM501 2.1 8.6 1.0
NB A:HEM501 2.1 8.6 1.0
NE2 A:HIS334 2.2 11.0 1.0
O A:HOH974 2.9 29.5 1.0
C4D A:HEM501 3.0 9.3 1.0
C1D A:HEM501 3.0 8.4 1.0
C4B A:HEM501 3.1 8.5 1.0
C1A A:HEM501 3.1 9.3 1.0
C4A A:HEM501 3.1 9.1 1.0
C1B A:HEM501 3.1 10.3 1.0
C4C A:HEM501 3.1 7.9 1.0
C1C A:HEM501 3.1 8.6 1.0
CE1 A:HIS334 3.1 10.3 1.0
CD2 A:HIS334 3.2 9.6 1.0
CHA A:HEM501 3.4 9.9 1.0
CHC A:HEM501 3.4 8.8 1.0
CHB A:HEM501 3.4 8.8 1.0
CHD A:HEM501 3.5 8.6 1.0
C2C A:HEM501 4.3 9.2 1.0
C2B A:HEM501 4.3 10.5 1.0
C3D A:HEM501 4.3 8.9 1.0
ND1 A:HIS334 4.3 9.4 1.0
C2A A:HEM501 4.3 9.8 1.0
C3A A:HEM501 4.3 10.0 1.0
C3C A:HEM501 4.3 9.2 1.0
C2D A:HEM501 4.3 8.4 1.0
C3B A:HEM501 4.3 8.5 1.0
NH1 A:ARG360 4.3 10.2 1.0
CG A:HIS334 4.4 8.9 1.0
CD A:ARG360 4.8 11.5 1.0

Iron binding site 2 out of 2 in 6fsk

Go back to Iron Binding Sites List in 6fsk
Iron binding site 2 out of 2 in the F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of F194Y Mutant of the Dye-Decolorizing Peroxidase (Dyp) From Pleurotus Ostreatus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:11.1
occ:1.00
FE B:HEM501 0.0 11.1 1.0
ND B:HEM501 2.0 10.7 1.0
NA B:HEM501 2.0 12.6 1.0
NB B:HEM501 2.1 11.9 1.0
NC B:HEM501 2.1 12.3 1.0
NE2 B:HIS334 2.2 11.5 1.0
O B:HOH956 3.0 31.5 1.0
C1D B:HEM501 3.0 11.0 1.0
C4D B:HEM501 3.0 12.3 1.0
C4A B:HEM501 3.0 12.0 1.0
C1B B:HEM501 3.0 11.8 1.0
C4C B:HEM501 3.1 10.9 1.0
C4B B:HEM501 3.1 11.2 1.0
C1A B:HEM501 3.1 11.0 1.0
C1C B:HEM501 3.1 11.5 1.0
CE1 B:HIS334 3.1 10.3 1.0
CD2 B:HIS334 3.2 9.6 1.0
CHB B:HEM501 3.4 12.4 1.0
CHD B:HEM501 3.4 11.3 1.0
CHA B:HEM501 3.4 10.8 1.0
CHC B:HEM501 3.5 10.5 1.0
C3D B:HEM501 4.3 11.4 1.0
C2A B:HEM501 4.3 11.2 1.0
C2B B:HEM501 4.3 11.1 1.0
ND1 B:HIS334 4.3 10.0 1.0
C2D B:HEM501 4.3 11.9 1.0
C3A B:HEM501 4.3 11.7 1.0
C3B B:HEM501 4.3 10.5 1.0
C2C B:HEM501 4.3 10.3 1.0
NH1 B:ARG360 4.3 15.2 1.0
CG B:HIS334 4.3 9.9 1.0
C3C B:HEM501 4.3 11.3 1.0
CD B:ARG360 4.9 14.1 1.0

Reference:

E.Fernandez-Fueyo, I.Davo-Siguero, D.Almendral, D.Linde, M.C.Baratto, R.Pogni, A.Romero, V.Guallar, A.T.Martinez. Description of A Non-Canonical Mn(II)-Oxidation Site in Peroxidases Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B02306
Page generated: Sun Dec 13 16:26:26 2020

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