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Iron in PDB 6fyj: Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid

Enzymatic activity of Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid

All present enzymatic activity of Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid:
1.11.2.4;

Protein crystallography data

The structure of Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid, PDB code: 6fyj was solved by H.M.Girvan, H.Poddar, K.J.Mclean, D.Leys, A.W.Munro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.14 / 1.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.952, 71.173, 68.425, 90.00, 103.58, 90.00
R / Rfree (%) 17.3 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid (pdb code 6fyj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid, PDB code: 6fyj:

Iron binding site 1 out of 1 in 6fyj

Go back to Iron Binding Sites List in 6fyj
Iron binding site 1 out of 1 in the Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome P450 Peroxygenase CYP152K6 in Complex with Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe502

b:12.6
occ:1.00
FE A:HEM502 0.0 12.6 1.0
NA A:HEM502 2.0 13.1 1.0
NC A:HEM502 2.0 12.5 1.0
NB A:HEM502 2.0 13.7 1.0
ND A:HEM502 2.0 14.0 1.0
O A:HOH735 2.1 20.2 1.0
SG A:CYS365 2.3 12.8 1.0
C1B A:HEM502 3.0 14.5 1.0
C4A A:HEM502 3.0 11.9 1.0
C1A A:HEM502 3.0 10.4 1.0
C1D A:HEM502 3.0 12.9 1.0
C1C A:HEM502 3.1 12.2 1.0
C4D A:HEM502 3.1 11.1 1.0
C4B A:HEM502 3.1 13.2 1.0
C4C A:HEM502 3.1 13.8 1.0
CB A:CYS365 3.4 10.9 1.0
CHB A:HEM502 3.4 13.0 1.0
CHA A:HEM502 3.4 10.6 1.0
CHC A:HEM502 3.4 13.7 1.0
CHD A:HEM502 3.5 12.9 1.0
CA A:CYS365 4.0 10.7 1.0
C3B A:HEM502 4.2 13.4 1.0
C3D A:HEM502 4.2 11.9 1.0
C2D A:HEM502 4.3 12.0 1.0
C2B A:HEM502 4.3 13.7 1.0
C2A A:HEM502 4.3 12.2 1.0
C2C A:HEM502 4.3 11.9 1.0
C3A A:HEM502 4.3 11.7 1.0
C3C A:HEM502 4.3 13.1 1.0
NE2 A:GLN354 4.5 12.3 1.0
C A:CYS365 4.8 11.4 1.0
C2 A:MYR501 4.8 26.2 1.0
CB A:PRO245 4.8 14.4 1.0
N A:ALA366 4.8 12.6 1.0
N A:GLY367 4.8 12.8 1.0
O A:HOH928 4.9 30.9 1.0
O A:HOH864 5.0 23.6 1.0

Reference:

H.M.Girvan, H.Poddar, K.J.Mclean, D.R.Nelson, K.A.Hollywood, C.W.Levy, D.Leys, A.W.Munro. Structural and Catalytic Properties of the Peroxygenase P450 Enzyme CYP152K6 From Bacillus Methanolicus. J. Inorg. Biochem. V. 188 18 2018.
ISSN: ISSN 1873-3344
PubMed: 30119014
DOI: 10.1016/J.JINORGBIO.2018.08.002
Page generated: Sun Dec 13 16:26:40 2020

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