Iron in PDB 6gkb: Iron Soak Structure of Y40F Synftn

Enzymatic activity of Iron Soak Structure of Y40F Synftn

All present enzymatic activity of Iron Soak Structure of Y40F Synftn:
1.16.3.2;

Protein crystallography data

The structure of Iron Soak Structure of Y40F Synftn, PDB code: 6gkb was solved by A.M.Hemmings, J.M.Bradley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.47 / 1.90
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 176.679, 176.679, 176.679, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 21

Iron Binding Sites:

The binding sites of Iron atom in the Iron Soak Structure of Y40F Synftn (pdb code 6gkb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Iron Soak Structure of Y40F Synftn, PDB code: 6gkb:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6gkb

Go back to Iron Binding Sites List in 6gkb
Iron binding site 1 out of 2 in the Iron Soak Structure of Y40F Synftn


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron Soak Structure of Y40F Synftn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:41.8
occ:0.75
O A:HOH315 2.0 49.0 1.0
OE1 A:GLU33 2.1 44.6 1.0
OE1 A:GLU66 2.1 43.4 1.0
O A:HOH306 2.3 49.3 1.0
ND1 A:HIS69 2.4 36.8 1.0
CD A:GLU66 2.9 45.4 1.0
CD A:GLU33 3.0 46.9 1.0
OE2 A:GLU66 3.2 48.8 1.0
OE2 A:GLU33 3.3 36.4 1.0
CG A:HIS69 3.4 36.9 1.0
CE1 A:HIS69 3.4 40.0 1.0
CB A:HIS69 3.5 35.1 1.0
CG2 A:THR113 4.0 36.7 1.0
OE1 A:GLN143 4.1 38.0 1.0
O A:HOH407 4.3 51.0 1.0
CG A:GLU66 4.3 36.8 1.0
CG A:GLU33 4.4 45.8 1.0
O A:HOH307 4.4 63.9 1.0
CA A:GLU66 4.5 30.1 1.0
O A:HOH392 4.5 40.1 1.0
CD2 A:HIS69 4.5 38.8 1.0
NE2 A:HIS69 4.5 36.0 1.0
O A:HOH302 4.6 55.9 1.0
CB A:GLU66 4.6 33.3 1.0
CB A:GLU33 4.7 35.9 1.0
O A:GLU66 4.8 31.0 1.0
CD A:GLN143 4.9 39.5 1.0

Iron binding site 2 out of 2 in 6gkb

Go back to Iron Binding Sites List in 6gkb
Iron binding site 2 out of 2 in the Iron Soak Structure of Y40F Synftn


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron Soak Structure of Y40F Synftn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:62.6
occ:0.20
O A:HOH420 2.2 63.8 1.0
O A:HOH452 2.8 65.5 1.0
OD2 A:ASP137 3.9 39.1 1.0
CB A:ASP137 4.1 38.4 1.0
O A:HOH375 4.2 76.8 1.0
CG A:ASP137 4.4 34.1 1.0

Reference:

J.M.Bradley, D.A.Svistunenko, J.Pullin, N.Hill, R.K.Stuart, B.Palenik, M.T.Wilson, A.M.Hemmings, G.R.Moore, N.E.Le Brun. Reaction of O2WITH A Diiron Protein Generates A Mixed-Valent FE2+/FE3+Center and Peroxide. Proc. Natl. Acad. Sci. V. 116 2058 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30659147
DOI: 10.1073/PNAS.1809913116
Page generated: Sun Dec 13 16:27:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy