Iron in PDB 6gym: Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)

All present enzymatic activity of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist):
2.7.7.6; 3.6.4.12;

The structure of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	16 atoms

The binding sites of Iron atom in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) (pdb code 6gym). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist), PDB code: 6gym:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ 0:Fe801 b:0.0 occ:1.00 FE1 0:SF4801 0.0 0.0 1.0 S2 0:SF4801 2.3 0.0 1.0 S4 0:SF4801 2.3 0.0 1.0 S3 0:SF4801 2.3 0.0 1.0 FE4 0:SF4801 2.7 0.0 1.0 FE3 0:SF4801 2.7 0.0 1.0 FE2 0:SF4801 2.7 0.0 1.0 SG 0:CYS115 3.4 0.0 1.0 CB 0:HIS117 3.8 0.0 1.0 S1 0:SF4801 3.9 0.0 1.0 CD 0:PRO118 4.1 0.0 1.0 N 0:HIS117 4.4 0.0 1.0 CB 0:CYS115 4.6 0.0 1.0 CA 0:HIS117 4.7 0.0 1.0 NH2 0:ARG111 4.7 0.0 1.0 CA 0:CYS133 4.8 0.0 1.0 CG 0:HIS117 4.8 0.0 1.0 N 0:LEU116 4.9 0.0 1.0 CB 0:CYS133 4.9 0.0 1.0

Iron binding site 2 out of 4 in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ 0:Fe801 b:0.0 occ:1.00 FE2 0:SF4801 0.0 0.0 1.0 S4 0:SF4801 2.3 0.0 1.0 S1 0:SF4801 2.3 0.0 1.0 S3 0:SF4801 2.3 0.0 1.0 FE4 0:SF4801 2.7 0.0 1.0 FE3 0:SF4801 2.7 0.0 1.0 FE1 0:SF4801 2.7 0.0 1.0 SG 0:CYS156 3.1 0.0 1.0 CB 0:CYS156 3.6 0.0 1.0 CB 0:HIS117 3.8 0.0 1.0 S2 0:SF4801 3.9 0.0 1.0 CB 0:MET136 4.5 0.0 1.0 CG 0:HIS117 4.5 0.0 1.0 CD2 0:HIS117 5.0 0.0 1.0

Iron binding site 3 out of 4 in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ 0:Fe801 b:0.0 occ:1.00 FE3 0:SF4801 0.0 0.0 1.0 S2 0:SF4801 2.3 0.0 1.0 S1 0:SF4801 2.3 0.0 1.0 S4 0:SF4801 2.3 0.0 1.0 FE2 0:SF4801 2.7 0.0 1.0 FE1 0:SF4801 2.7 0.0 1.0 FE4 0:SF4801 2.7 0.0 1.0 CA 0:CYS133 3.4 0.0 1.0 CB 0:CYS133 3.8 0.0 1.0 O 0:CYS133 3.9 0.0 1.0 SG 0:CYS133 3.9 0.0 1.0 S3 0:SF4801 3.9 0.0 1.0 CB 0:MET136 4.0 0.0 1.0 C 0:CYS133 4.1 0.0 1.0 O 0:LYS132 4.2 0.0 1.0 N 0:CYS133 4.3 0.0 1.0 C 0:LYS132 4.6 0.0 1.0 NH2 0:ARG111 4.8 0.0 1.0

Iron binding site 4 out of 4 in the Structure of A Yeast Closed Complex with Distorted Dna (Ccdist)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of A Yeast Closed Complex with Distorted Dna (Ccdist) within 5.0Å range: probe atom residue distance (Å) B Occ 0:Fe801 b:0.0 occ:1.00 FE4 0:SF4801 0.0 0.0 1.0 S2 0:SF4801 2.3 0.0 1.0 S3 0:SF4801 2.3 0.0 1.0 S1 0:SF4801 2.3 0.0 1.0 FE2 0:SF4801 2.7 0.0 1.0 FE1 0:SF4801 2.7 0.0 1.0 FE3 0:SF4801 2.7 0.0 1.0 SG 0:CYS191 3.1 0.0 1.0 CB 0:TYR193 3.8 0.0 1.0 S4 0:SF4801 3.9 0.0 1.0 CB 0:CYS191 4.2 0.0 1.0 N 0:TYR193 4.5 0.0 1.0 SG 0:CYS115 4.7 0.0 1.0 CG 0:TYR193 4.7 0.0 1.0 CD 0:PRO192 4.8 0.0 1.0 CA 0:TYR193 4.8 0.0 1.0 NH2 0:ARG111 4.8 0.0 1.0 CD2 0:TYR193 4.8 0.0 1.0 CA 0:CYS191 4.9 0.0 1.0

C.Dienemann, B.Schwalb, S.Schilbach, P.Cramer. Promoter Distortion and Opening in the Rna Polymerase II Cleft. Mol. Cell V. 73 97 2019.
ISSN: ISSN 1097-4164
PubMed: 30472190
DOI: 10.1016/J.MOLCEL.2018.10.014