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Iron in PDB 6h6t: Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)

Enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)

All present enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8):
1.16.3.1;

Protein crystallography data

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8), PDB code: 6h6t was solved by M.Kuenzle, M.Lach, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.46 / 1.90
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 153.229, 153.229, 135.803, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.2

Other elements in 6h6t:

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 6 atoms
Chlorine (Cl) 6 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) (pdb code 6h6t). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8), PDB code: 6h6t:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 1 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:76.4
occ:1.00
OE1 A:GLU27 2.3 39.1 1.0
OE1 A:GLU62 2.4 42.6 1.0
ND1 A:HIS65 2.8 51.1 1.0
CD A:GLU27 3.2 39.2 1.0
CD A:GLU62 3.2 37.8 1.0
OE2 A:GLU62 3.3 47.4 1.0
OE2 A:GLU27 3.5 34.4 1.0
CG A:HIS65 3.5 40.9 1.0
OE1 A:GLN141 3.6 50.9 1.0
CB A:HIS65 3.7 29.1 1.0
CE1 A:HIS65 3.8 56.1 1.0
CG1 A:VAL110 4.5 27.6 1.0
CD A:GLN141 4.5 36.0 1.0
CG A:GLU27 4.6 33.5 1.0
CG A:GLU62 4.6 33.4 1.0
CA A:GLU62 4.7 27.4 1.0
CD2 A:HIS65 4.7 45.5 1.0
NE2 A:HIS65 4.7 55.6 1.0
CD2 A:TYR137 4.9 30.6 1.0
CE2 A:TYR137 4.9 26.1 1.0
CB A:GLU27 5.0 29.7 1.0
CB A:GLU62 5.0 29.4 1.0

Iron binding site 2 out of 12 in 6h6t

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Iron binding site 2 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:70.3
occ:1.00
OE1 B:GLU27 2.4 42.5 1.0
OE1 B:GLU62 2.6 41.3 1.0
ND1 B:HIS65 2.7 39.4 1.0
NE2 B:GLN141 2.9 43.5 1.0
CD B:GLU27 3.2 33.9 1.0
CD B:GLU62 3.4 38.5 1.0
OE2 B:GLU27 3.4 33.5 1.0
OE2 B:GLU62 3.6 58.9 1.0
CE1 B:HIS65 3.7 43.7 1.0
CG B:HIS65 3.7 33.9 1.0
CB B:HIS65 3.9 30.1 1.0
CD B:GLN141 4.1 37.8 1.0
CG1 B:VAL110 4.2 21.8 1.0
CD2 B:TYR137 4.6 26.8 1.0
CG B:GLU27 4.6 28.1 1.0
CG B:GLU62 4.7 29.3 1.0
NE2 B:HIS65 4.8 46.6 1.0
OE1 B:GLN141 4.8 44.3 1.0
CD2 B:HIS65 4.9 41.1 1.0
CA B:GLU62 4.9 24.7 1.0
CG B:GLN141 5.0 34.5 1.0
CE2 B:TYR137 5.0 23.6 1.0

Iron binding site 3 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 3 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:68.5
occ:1.00
OE1 C:GLU27 2.2 41.0 1.0
OE1 C:GLU62 2.4 44.0 1.0
ND1 C:HIS65 2.7 43.6 1.0
CD C:GLU62 3.0 32.1 1.0
CD C:GLU27 3.0 38.5 1.0
OE2 C:GLU62 3.1 45.7 1.0
OE2 C:GLU27 3.2 41.9 1.0
OE1 C:GLN141 3.5 39.4 1.0
CE1 C:HIS65 3.6 43.2 1.0
CG C:HIS65 3.7 36.0 1.0
CB C:HIS65 3.9 26.2 1.0
CG1 C:VAL110 4.2 22.2 1.0
CD C:GLN141 4.4 32.4 1.0
CG C:GLU62 4.4 28.4 1.0
CG C:GLU27 4.5 33.6 1.0
CA C:GLU62 4.6 26.1 1.0
NE2 C:HIS65 4.7 44.5 1.0
CD2 C:HIS65 4.8 37.4 1.0
NE2 C:GLN141 4.9 33.0 1.0
CB C:GLU62 4.9 26.5 1.0
CB C:GLU27 4.9 26.1 1.0
CD2 C:TYR137 5.0 27.3 1.0

Iron binding site 4 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 4 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:76.2
occ:1.00
OE1 D:GLU27 2.3 47.0 1.0
OE1 D:GLU62 2.4 44.6 1.0
ND1 D:HIS65 2.8 51.2 1.0
CD D:GLU62 3.0 42.3 1.0
OE2 D:GLU62 3.1 45.3 1.0
CD D:GLU27 3.3 41.3 1.0
OE1 D:GLN141 3.3 32.1 1.0
CG D:HIS65 3.6 47.5 1.0
OE2 D:GLU27 3.7 45.6 1.0
CE1 D:HIS65 3.7 54.4 1.0
CB D:HIS65 3.9 36.8 1.0
CG1 D:VAL110 4.2 32.6 1.0
CG D:GLU62 4.3 36.8 1.0
CD D:GLN141 4.4 34.5 1.0
CG D:GLU27 4.6 34.6 1.0
CA D:GLU62 4.6 30.2 1.0
NE2 D:HIS65 4.7 58.2 1.0
CD2 D:HIS65 4.7 49.9 1.0
CB D:GLU62 4.8 30.4 1.0

Iron binding site 5 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 5 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe202

b:67.2
occ:1.00
OE1 E:GLU27 2.2 44.6 1.0
OE1 E:GLU62 2.5 39.3 1.0
ND1 E:HIS65 2.7 42.5 1.0
CD E:GLU27 3.1 39.4 1.0
OE2 E:GLU27 3.3 37.4 1.0
CD E:GLU62 3.3 33.0 1.0
OE2 E:GLU62 3.4 38.6 1.0
CG E:HIS65 3.5 33.3 1.0
CE1 E:HIS65 3.6 43.0 1.0
CB E:HIS65 3.6 27.9 1.0
OE1 E:GLN141 3.7 31.4 1.0
CG E:GLU27 4.4 30.7 1.0
CG1 E:VAL110 4.4 22.5 1.0
CD2 E:HIS65 4.6 36.8 1.0
CA E:GLU62 4.6 22.4 1.0
NE2 E:HIS65 4.6 42.4 1.0
CG E:GLU62 4.7 27.2 1.0
CD E:GLN141 4.7 36.0 1.0
CD2 E:TYR137 4.7 27.9 1.0
CB E:GLU27 4.9 23.8 1.0
CB E:GLU62 4.9 24.3 1.0
CE2 E:TYR137 5.0 29.0 1.0

Iron binding site 6 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 6 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe202

b:79.0
occ:1.00
OE1 F:GLU27 2.3 48.7 1.0
OE1 F:GLU62 2.3 49.4 1.0
ND1 F:HIS65 2.8 46.6 1.0
CD F:GLU27 3.2 40.7 1.0
CD F:GLU62 3.2 46.4 1.0
OE2 F:GLU27 3.4 39.8 1.0
OE2 F:GLU62 3.6 51.8 1.0
CG F:HIS65 3.6 41.6 1.0
CB F:HIS65 3.7 35.5 1.0
OE1 F:GLN141 3.7 43.7 1.0
CE1 F:HIS65 3.8 50.9 1.0
CG1 F:VAL110 4.3 31.6 1.0
CG F:GLU62 4.5 41.2 1.0
CG F:GLU27 4.6 37.2 1.0
CD F:GLN141 4.7 43.1 1.0
CA F:GLU62 4.8 31.9 1.0
CD2 F:TYR137 4.8 38.2 1.0
CD2 F:HIS65 4.8 41.9 1.0
NE2 F:HIS65 4.9 52.7 1.0
CB F:GLU62 4.9 34.9 1.0
CB F:GLU27 5.0 29.6 1.0
CE2 F:TYR137 5.0 36.3 1.0

Iron binding site 7 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 7 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:60.1
occ:1.00
OE1 G:GLU27 2.2 39.5 1.0
OE1 G:GLU62 2.5 39.4 1.0
ND1 G:HIS65 2.9 41.9 1.0
CD G:GLU27 3.2 30.3 1.0
CD G:GLU62 3.4 39.1 1.0
OE2 G:GLU27 3.6 31.8 1.0
CB G:HIS65 3.6 26.4 1.0
CG G:HIS65 3.6 34.8 1.0
OE1 G:GLN141 3.7 26.7 1.0
OE2 G:GLU62 3.7 48.7 1.0
CE1 G:HIS65 3.9 46.6 1.0
CG1 G:VAL110 4.4 24.3 1.0
CG G:GLU27 4.5 26.7 1.0
CG G:GLU62 4.7 32.6 1.0
CA G:GLU62 4.7 24.4 1.0
CB G:GLU27 4.7 22.6 1.0
CD G:GLN141 4.7 28.5 1.0
CD2 G:TYR137 4.7 26.0 1.0
CD2 G:HIS65 4.8 38.0 1.0
CE2 G:TYR137 4.9 25.8 1.0
CB G:GLU62 4.9 29.2 1.0
NE2 G:HIS65 5.0 44.4 1.0

Iron binding site 8 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 8 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:54.9
occ:1.00
OE1 H:GLU27 2.2 45.0 1.0
OE1 H:GLU62 2.4 38.1 1.0
ND1 H:HIS65 2.7 43.2 1.0
CD H:GLU27 3.1 31.9 1.0
CD H:GLU62 3.3 35.9 1.0
OE2 H:GLU27 3.4 29.0 1.0
CG H:HIS65 3.5 36.5 1.0
CE1 H:HIS65 3.6 43.0 1.0
OE2 H:GLU62 3.6 47.9 1.0
OE1 H:GLN141 3.6 30.8 1.0
CB H:HIS65 3.7 26.4 1.0
CG1 H:VAL110 4.4 22.6 1.0
CG H:GLU27 4.4 28.7 1.0
CD H:GLN141 4.6 27.1 1.0
CD2 H:HIS65 4.6 41.3 1.0
NE2 H:HIS65 4.6 43.9 1.0
CG H:GLU62 4.6 30.6 1.0
CA H:GLU62 4.6 25.8 1.0
CB H:GLU27 4.7 22.8 1.0
CD2 H:TYR137 4.8 25.2 1.0
CB H:GLU62 4.9 27.2 1.0
OE1 H:GLU107 4.9 34.4 1.0

Iron binding site 9 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 9 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:55.7
occ:1.00
OE1 I:GLU62 2.3 37.9 1.0
OE1 I:GLU27 2.3 53.9 1.0
ND1 I:HIS65 2.8 38.6 1.0
CD I:GLU62 3.1 35.1 1.0
CD I:GLU27 3.2 38.9 1.0
OE2 I:GLU62 3.3 42.2 1.0
OE1 I:GLN141 3.4 37.4 1.0
OE2 I:GLU27 3.5 36.0 1.0
CG I:HIS65 3.5 36.6 1.0
CB I:HIS65 3.6 30.4 1.0
CE1 I:HIS65 3.8 42.4 1.0
CG1 I:VAL110 4.4 21.7 1.0
CG I:GLU62 4.5 33.2 1.0
CD I:GLN141 4.5 32.2 1.0
CG I:GLU27 4.5 33.2 1.0
CA I:GLU62 4.6 28.8 1.0
CD2 I:HIS65 4.7 38.6 1.0
OE1 I:GLU107 4.8 37.4 1.0
CD2 I:TYR137 4.8 27.2 1.0
CB I:GLU62 4.8 29.7 1.0
NE2 I:HIS65 4.8 44.5 1.0
CB I:GLU27 4.8 28.3 1.0
NE2 I:GLN141 5.0 30.8 1.0
CE2 I:TYR137 5.0 28.5 1.0

Iron binding site 10 out of 12 in 6h6t

Go back to Iron Binding Sites List in 6h6t
Iron binding site 10 out of 12 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe202

b:48.5
occ:1.00
OE1 J:GLU27 2.2 40.2 1.0
OE1 J:GLU62 2.2 34.7 1.0
ND1 J:HIS65 2.5 37.1 1.0
CD J:GLU27 3.2 31.9 1.0
CD J:GLU62 3.2 29.2 1.0
CE1 J:HIS65 3.4 40.5 1.0
CG J:HIS65 3.5 31.6 1.0
OE2 J:GLU62 3.5 43.5 1.0
OE1 J:GLN141 3.5 28.8 1.0
OE2 J:GLU27 3.6 31.7 1.0
CB J:HIS65 3.7 23.8 1.0
CG1 J:VAL110 4.4 20.3 1.0
CG J:GLU27 4.5 26.1 1.0
CG J:GLU62 4.5 25.1 1.0
NE2 J:HIS65 4.6 38.6 1.0
CA J:GLU62 4.6 22.1 1.0
CD2 J:HIS65 4.6 32.3 1.0
CD J:GLN141 4.6 27.7 1.0
CD2 J:TYR137 4.8 22.1 1.0
CB J:GLU27 4.8 20.1 1.0
CB J:GLU62 4.9 23.2 1.0
OE1 J:GLU107 4.9 36.3 1.0
CE2 J:TYR137 5.0 22.9 1.0

Reference:

M.Kuenzle, M.Lach, T.Beck. Self-Assembly of Protein Crystals Into Different Crystal Structures Using Charged Patches on Oppositely Charged Ferritin Protein Containers To Be Published.
Page generated: Sun Dec 13 16:28:21 2020

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