Iron in PDB 6hhb: Structure of Iron Bound Ibps From Dickeya Dadantii

The structure of Structure of Iron Bound Ibps From Dickeya Dadantii, PDB code: 6hhb was solved by V.Gueguen-Chaignon, G.Condemine, L.Terradot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.99 / 1.80
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	58.891, 78.889, 83.913, 73.25, 74.74, 84.92
R / Rfree (%)	15.5 / 19.1

The binding sites of Iron atom in the Structure of Iron Bound Ibps From Dickeya Dadantii (pdb code 6hhb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of Iron Bound Ibps From Dickeya Dadantii, PDB code: 6hhb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Structure of Iron Bound Ibps From Dickeya Dadantii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Iron Bound Ibps From Dickeya Dadantii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:30.8 occ:0.55 O A:HOH604 2.7 28.5 1.0 O A:HOH723 3.0 19.4 1.0 OE1 A:GLN110 3.3 23.5 1.0 N A:ASP193 3.3 17.5 1.0 CB A:ASP193 3.6 19.7 1.0 CG A:ASP193 3.9 23.1 1.0 CG2 A:THR111 4.0 19.8 1.0 CA A:ASP193 4.0 19.4 1.0 OD2 A:ASP193 4.1 25.1 1.0 CD A:GLN110 4.1 21.5 1.0 CG A:GLN110 4.2 18.5 1.0 O A:HOH738 4.2 34.0 1.0 C A:ASP192 4.3 16.3 1.0 CA A:ASP192 4.4 15.1 1.0 CE A:MET334 4.4 15.8 1.0 OD1 A:ASP192 4.5 19.3 1.0 CB A:LYS87 4.6 16.6 1.0 N A:ALA194 4.6 18.0 1.0 OD1 A:ASP193 4.6 22.1 1.0 O A:HOH578 4.7 19.7 1.0 C A:ASP193 4.8 18.3 1.0 N A:LYS87 4.8 17.6 1.0 CG A:ASP192 4.8 17.1 1.0 CB A:SER86 5.0 19.1 1.0

Iron binding site 2 out of 4 in the Structure of Iron Bound Ibps From Dickeya Dadantii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Iron Bound Ibps From Dickeya Dadantii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe401 b:31.6 occ:0.56 O B:HOH676 2.7 28.8 1.0 O B:HOH713 2.9 20.8 1.0 OE1 B:GLN110 3.2 29.1 1.0 N B:ASP193 3.3 17.7 1.0 CB B:ASP193 3.6 20.8 1.0 CG2 B:THR111 3.9 18.2 1.0 CA B:ASP193 4.0 18.3 1.0 CG B:ASP193 4.0 22.7 1.0 CD B:GLN110 4.1 25.1 1.0 OD2 B:ASP193 4.1 23.3 1.0 CG B:GLN110 4.1 21.7 1.0 C B:ASP192 4.3 17.7 1.0 O B:HOH732 4.3 30.5 1.0 CE B:MET334 4.4 23.2 1.0 CA B:ASP192 4.4 17.8 1.0 N B:ALA194 4.6 21.7 1.0 CB B:LYS87 4.6 16.9 1.0 OD1 B:ASP192 4.6 20.4 1.0 O B:HOH563 4.7 25.3 1.0 C B:ASP193 4.8 19.0 1.0 OD1 B:ASP193 4.8 23.6 1.0 N B:LYS87 4.8 17.1 1.0 CG B:ASP192 4.9 20.7 1.0 CB B:SER86 4.9 16.7 1.0 O B:HOH658 4.9 31.7 1.0

Iron binding site 3 out of 4 in the Structure of Iron Bound Ibps From Dickeya Dadantii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Iron Bound Ibps From Dickeya Dadantii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:27.7 occ:0.50 O C:HOH526 2.8 31.7 1.0 O C:HOH716 2.9 21.9 1.0 N C:ASP193 3.3 19.1 1.0 OE1 C:GLN110 3.4 26.9 1.0 CB C:ASP193 3.5 18.6 1.0 CG C:ASP193 3.9 21.4 1.0 CA C:ASP193 4.0 18.6 1.0 OD2 C:ASP193 4.0 22.0 1.0 CG2 C:THR111 4.0 16.8 1.0 CD C:GLN110 4.2 22.0 1.0 O C:HOH726 4.2 31.3 1.0 CG C:GLN110 4.2 22.1 1.0 C C:ASP192 4.3 17.4 1.0 CE C:MET334 4.3 15.6 1.0 CA C:ASP192 4.4 16.9 1.0 OD1 C:ASP192 4.5 20.0 1.0 N C:ALA194 4.6 15.6 1.0 CB C:LYS87 4.6 18.6 1.0 OD1 C:ASP193 4.7 21.0 1.0 C C:ASP193 4.7 16.9 1.0 O C:HOH553 4.8 25.3 1.0 CG C:ASP192 4.8 21.4 1.0 N C:LYS87 4.9 20.3 1.0 CB C:SER86 4.9 19.5 1.0 O C:HOH657 5.0 27.7 1.0

Iron binding site 4 out of 4 in the Structure of Iron Bound Ibps From Dickeya Dadantii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Iron Bound Ibps From Dickeya Dadantii within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:27.9 occ:0.49 O D:HOH644 2.7 31.4 1.0 O D:HOH717 2.9 21.5 1.0 OE1 D:GLN110 3.2 24.5 1.0 N D:ASP193 3.4 18.9 1.0 CB D:ASP193 3.6 20.3 1.0 CG2 D:THR111 3.8 16.5 1.0 CD D:GLN110 4.0 20.5 1.0 CA D:ASP193 4.0 17.9 1.0 CG D:GLN110 4.1 18.2 1.0 CG D:ASP193 4.1 24.4 1.0 OD2 D:ASP193 4.2 24.8 1.0 CE D:MET334 4.3 22.4 1.0 O D:HOH723 4.3 27.2 1.0 C D:ASP192 4.4 18.6 1.0 CA D:ASP192 4.5 17.1 1.0 CB D:LYS87 4.6 18.7 1.0 OD1 D:ASP192 4.6 19.6 1.0 N D:ALA194 4.7 19.5 1.0 N D:LYS87 4.8 18.7 1.0 CB D:SER86 4.8 18.6 1.0 O D:HOH562 4.8 22.4 1.0 C D:ASP193 4.8 18.9 1.0 OD1 D:ASP193 4.9 23.9 1.0 CG D:ASP192 4.9 21.8 1.0

V.Gueguen-Chaignon, G.Condemine, L.Terradot. Structure of Ibps From Dickeya Dadantii To Be Published.