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Iron in PDB 6hum: Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus (pdb code 6hum). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus, PDB code: 6hum:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6hum

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Iron binding site 1 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:28.7
occ:1.00
 FE1 I:SF4201 0.0 28.7 1.0
SG I:CYS103 2.3 26.4 1.0
S3 I:SF4201 2.3 28.7 1.0
S4 I:SF4201 2.3 28.7 1.0
S2 I:SF4201 2.3 28.7 1.0
FE4 I:SF4201 2.7 28.7 1.0
FE2 I:SF4201 2.7 28.7 1.0
FE3 I:SF4201 2.7 28.7 1.0
CB I:CYS103 3.6 26.4 1.0
S1 I:SF4201 3.9 28.7 1.0
N I:ILE104 4.0 27.5 1.0
CA I:CYS103 4.1 26.4 1.0
N I:PHE105 4.2 27.6 1.0
SG I:CYS73 4.4 28.1 1.0
C I:CYS103 4.6 26.4 1.0
SG I:CYS109 4.7 28.8 1.0
CA I:PHE105 4.8 27.6 1.0
CG2 I:ILE104 4.8 27.5 1.0
SG I:CYS106 4.9 27.9 1.0
CG2 I:ILE98 5.0 27.5 1.0
N I:CYS106 5.0 27.9 1.0

Iron binding site 2 out of 12 in 6hum

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Iron binding site 2 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:28.7
occ:1.00
 FE2 I:SF4201 0.0 28.7 1.0
SG I:CYS109 2.3 28.8 1.0
S4 I:SF4201 2.3 28.7 1.0
S3 I:SF4201 2.3 28.7 1.0
S1 I:SF4201 2.3 28.7 1.0
FE1 I:SF4201 2.7 28.7 1.0
FE3 I:SF4201 2.7 28.7 1.0
FE4 I:SF4201 2.7 28.7 1.0
CB I:CYS109 2.8 28.8 1.0
N I:CYS109 3.6 28.8 1.0
CA I:CYS109 3.8 28.8 1.0
S2 I:SF4201 3.9 28.7 1.0
N I:ALA107 4.1 29.0 1.0
CA I:ALA107 4.1 29.0 1.0
N I:ASN108 4.3 28.8 1.0
C I:ALA107 4.4 29.0 1.0
SG I:CYS106 4.6 27.9 1.0
SG I:CYS103 4.7 26.4 1.0
N I:VAL110 4.8 29.8 1.0
C I:ASN108 4.8 28.8 1.0
C I:CYS109 4.8 28.8 1.0
CD1 I:ILE56 4.8 29.6 1.0
SG I:CYS73 5.0 28.1 1.0

Iron binding site 3 out of 12 in 6hum

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Iron binding site 3 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:28.7
occ:1.00
 FE3 I:SF4201 0.0 28.7 1.0
SG I:CYS73 2.3 28.1 1.0
S2 I:SF4201 2.3 28.7 1.0
S1 I:SF4201 2.3 28.7 1.0
S4 I:SF4201 2.3 28.7 1.0
FE4 I:SF4201 2.7 28.7 1.0
FE2 I:SF4201 2.7 28.7 1.0
FE1 I:SF4201 2.7 28.7 1.0
CB I:CYS73 2.8 28.1 1.0
CA I:CYS73 3.7 28.1 1.0
S3 I:SF4201 3.9 28.7 1.0
CD I:PRO78 4.3 27.9 1.0
CB I:CYS109 4.5 28.8 1.0
CD I:PRO74 4.5 27.3 1.0
N I:CYS73 4.6 28.1 1.0
CB I:LEU77 4.6 27.9 1.0
O I:CYS69 4.6 30.3 1.0
SG I:CYS106 4.7 27.9 1.0
C I:CYS73 4.7 28.1 1.0
SG I:CYS109 4.8 28.8 1.0
SG I:CYS103 4.9 26.4 1.0
N I:PRO74 4.9 27.3 1.0
CG I:PRO78 5.0 27.9 1.0

Iron binding site 4 out of 12 in 6hum

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Iron binding site 4 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:28.7
occ:1.00
 FE4 I:SF4201 0.0 28.7 1.0
SG I:CYS106 2.3 27.9 1.0
S1 I:SF4201 2.3 28.7 1.0
S2 I:SF4201 2.3 28.7 1.0
S3 I:SF4201 2.3 28.7 1.0
FE3 I:SF4201 2.7 28.7 1.0
FE1 I:SF4201 2.7 28.7 1.0
FE2 I:SF4201 2.7 28.7 1.0
N I:ALA107 3.6 29.0 1.0
N I:CYS106 3.7 27.9 1.0
CG2 I:ILE104 3.7 27.5 1.0
CB I:CYS106 3.7 27.9 1.0
S4 I:SF4201 3.9 28.7 1.0
SG I:CYS73 4.0 28.1 1.0
CA I:CYS106 4.1 27.9 1.0
CD I:PRO74 4.1 27.3 1.0
C I:CYS106 4.2 27.9 1.0
N I:PHE105 4.4 27.6 1.0
N I:ASN108 4.4 28.8 1.0
CA I:ALA107 4.5 29.0 1.0
SG I:CYS103 4.6 26.4 1.0
C I:PHE105 4.7 27.6 1.0
CB I:CYS73 4.8 28.1 1.0
CA I:PHE105 4.8 27.6 1.0
N I:ILE104 4.8 27.5 1.0
SG I:CYS109 4.9 28.8 1.0
CA I:CYS73 4.9 28.1 1.0
N I:CYS109 4.9 28.8 1.0
C I:ALA107 5.0 29.0 1.0
CB I:ILE104 5.0 27.5 1.0
C I:ILE104 5.0 27.5 1.0

Iron binding site 5 out of 12 in 6hum

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Iron binding site 5 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:37.2
occ:1.00
 FE1 I:SF4202 0.0 37.2 1.0
SG I:CYS66 2.2 32.9 1.0
S3 I:SF4202 2.3 37.2 1.0
S4 I:SF4202 2.3 37.2 1.0
S2 I:SF4202 2.3 37.2 1.0
FE2 I:SF4202 2.7 37.2 1.0
FE3 I:SF4202 2.7 37.2 1.0
FE4 I:SF4202 2.7 37.2 1.0
CB I:CYS66 3.6 32.9 1.0
N I:CYS66 3.6 32.9 1.0
S1 I:SF4202 3.9 37.2 1.0
CA I:CYS66 4.1 32.9 1.0
SG I:CYS69 4.2 30.3 1.0
N I:GLU67 4.3 31.3 1.0
N I:ALA65 4.6 34.3 1.0
C I:CYS66 4.6 32.9 1.0
SG I:CYS63 4.6 35.3 1.0
C I:ALA65 4.7 34.3 1.0
SG I:CYS113 4.7 31.8 1.0
N I:VAL68 4.7 29.9 1.0
CA I:ALA65 4.8 34.3 1.0
CD I:PRO114 4.8 31.6 1.0

Iron binding site 6 out of 12 in 6hum

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Iron binding site 6 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:37.2
occ:1.00
 FE2 I:SF4202 0.0 37.2 1.0
SG I:CYS69 2.3 30.3 1.0
S4 I:SF4202 2.3 37.2 1.0
S3 I:SF4202 2.3 37.2 1.0
S1 I:SF4202 2.3 37.2 1.0
FE1 I:SF4202 2.7 37.2 1.0
FE3 I:SF4202 2.7 37.2 1.0
FE4 I:SF4202 2.7 37.2 1.0
CB I:CYS69 3.6 30.3 1.0
S2 I:SF4202 3.9 37.2 1.0
CD2 I:LEU118 4.2 30.3 1.0
OH I:TYR96 4.2 30.7 1.0
CE1 I:TYR96 4.3 30.7 1.0
CZ I:TYR96 4.6 30.7 1.0
SG I:CYS66 4.6 32.9 1.0
N I:CYS69 4.6 30.3 1.0
SG I:CYS63 4.6 35.3 1.0
SG I:CYS113 4.7 31.8 1.0
CA I:CYS69 4.7 30.3 1.0

Iron binding site 7 out of 12 in 6hum

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Iron binding site 7 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:37.2
occ:1.00
 FE3 I:SF4202 0.0 37.2 1.0
SG I:CYS63 2.3 35.3 1.0
S4 I:SF4202 2.3 37.2 1.0
S1 I:SF4202 2.3 37.2 1.0
S2 I:SF4202 2.3 37.2 1.0
FE2 I:SF4202 2.7 37.2 1.0
FE1 I:SF4202 2.7 37.2 1.0
FE4 I:SF4202 2.7 37.2 1.0
CB I:CYS63 3.2 35.3 1.0
CA I:CYS63 3.5 35.3 1.0
S3 I:SF4202 3.9 37.2 1.0
N I:ILE64 3.9 34.5 1.0
N I:ALA65 4.1 34.3 1.0
C I:CYS63 4.2 35.3 1.0
CE1 I:PHE58 4.6 31.8 1.0
CA I:ALA65 4.7 34.3 1.0
N I:CYS63 4.7 35.3 1.0
N I:CYS66 4.9 32.9 1.0
SG I:CYS113 4.9 31.8 1.0
SG I:CYS66 4.9 32.9 1.0
SG I:CYS69 5.0 30.3 1.0

Iron binding site 8 out of 12 in 6hum

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Iron binding site 8 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe202

b:37.2
occ:1.00
 FE4 I:SF4202 0.0 37.2 1.0
SG I:CYS113 2.3 31.8 1.0
S3 I:SF4202 2.3 37.2 1.0
S2 I:SF4202 2.3 37.2 1.0
S1 I:SF4202 2.3 37.2 1.0
FE1 I:SF4202 2.7 37.2 1.0
FE3 I:SF4202 2.7 37.2 1.0
FE2 I:SF4202 2.7 37.2 1.0
CB I:CYS113 3.4 31.8 1.0
S4 I:SF4202 3.9 37.2 1.0
CA I:CYS113 4.0 31.8 1.0
OG1 I:THR115 4.1 33.0 1.0
SG I:CYS69 4.2 30.3 1.0
CB I:CYS117 4.4 32.7 1.0
SG I:CYS66 4.6 32.9 1.0
CB I:LEU118 4.7 30.3 1.0
CD I:PRO114 4.7 31.6 1.0
CD2 I:LEU118 4.7 30.3 1.0
C I:CYS113 4.8 31.8 1.0
SG I:CYS63 4.9 35.3 1.0
N I:PRO114 5.0 31.6 1.0

Iron binding site 9 out of 12 in 6hum

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Iron binding site 9 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe501

b:26.3
occ:1.00
 FE1 K:SF4501 0.0 26.3 1.0
SG K:CYS148 2.3 27.3 1.0
S2 K:SF4501 2.3 26.3 1.0
S4 K:SF4501 2.3 26.3 1.0
S3 K:SF4501 2.3 26.3 1.0
CB K:CYS148 2.3 27.3 1.0
FE4 K:SF4501 2.7 26.3 1.0
FE3 K:SF4501 2.7 26.3 1.0
FE2 K:SF4501 2.7 26.3 1.0
CA K:CYS148 2.9 27.3 1.0
N K:PRO149 3.6 28.4 1.0
C K:CYS148 3.7 27.3 1.0
CD K:PRO149 3.7 28.4 1.0
S1 K:SF4501 3.9 26.3 1.0
N K:CYS148 4.1 27.3 1.0
SG K:CYS52 4.2 30.2 1.0
NH2 H:ARG69 4.3 28.9 1.0
SG K:CYS117 4.4 26.7 1.0
NE H:ARG69 4.5 28.9 1.0
CG K:PRO149 4.5 28.4 1.0
CA K:PRO149 4.6 28.4 1.0
SG K:CYS53 4.6 29.8 1.0
CZ H:ARG69 4.9 28.9 1.0
O K:CYS148 4.9 27.3 1.0
O K:GLY147 4.9 26.5 1.0
CD1 I:ILE104 4.9 27.5 1.0
C K:GLY147 5.0 26.5 1.0

Iron binding site 10 out of 12 in 6hum

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Iron binding site 10 out of 12 in the Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Photosynthetic Complex I From Thermosynechococcus Elongatus within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe501

b:26.3
occ:1.00
 FE2 K:SF4501 0.0 26.3 1.0
SG K:CYS53 2.3 29.8 1.0
S3 K:SF4501 2.3 26.3 1.0
S4 K:SF4501 2.3 26.3 1.0
S1 K:SF4501 2.3 26.3 1.0
FE4 K:SF4501 2.7 26.3 1.0
FE3 K:SF4501 2.7 26.3 1.0
FE1 K:SF4501 2.7 26.3 1.0
CB K:CYS53 3.7 29.8 1.0
S2 K:SF4501 3.9 26.3 1.0
N K:CYS53 4.1 29.8 1.0
CA K:GLY115 4.2 26.1 1.0
SG K:CYS52 4.2 30.2 1.0
SG K:CYS148 4.2 27.3 1.0
CA K:CYS53 4.4 29.8 1.0
CA K:CYS148 4.6 27.3 1.0
CB K:CYS117 4.6 26.7 1.0
CA K:GLY88 4.7 28.6 1.0
CB K:CYS148 4.8 27.3 1.0
SG K:CYS117 4.8 26.7 1.0
N K:ALA116 4.9 24.9 1.0
N K:CYS117 4.9 26.7 1.0
O K:MET114 5.0 28.0 1.0
N K:GLY88 5.0 28.6 1.0

Reference:

J.M.Schuller, J.A.Birrell, H.Tanaka, T.Konuma, H.Wulfhorst, N.Cox, S.K.Schuller, J.Thiemann, W.Lubitz, P.Setif, T.Ikegami, B.D.Engel, G.Kurisu, M.M.Nowaczyk. Structural Adaptations of Photosynthetic Complex I Enable Ferredoxin-Dependent Electron Transfer. Science V. 363 257 2019.
ISSN: ESSN 1095-9203
PubMed: 30573545
DOI: 10.1126/SCIENCE.AAU3613
Page generated: Tue Aug 6 21:51:48 2024

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