Atomistry » Iron » PDB 6hqr-6i8j » 6hwh
Atomistry »
  Iron »
    PDB 6hqr-6i8j »
      6hwh »

Iron in PDB 6hwh: Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

Enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

All present enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis:
1.10.2.2; 1.9.3.1;

Other elements in 6hwh:

The structure of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis also contains other interesting chemical elements:

Copper (Cu) 6 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis (pdb code 6hwh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis, PDB code: 6hwh:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 1 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:78.6
occ:1.00
FE1 A:FES501 0.0 78.6 1.0
S2 A:FES501 2.2 78.6 1.0
S1 A:FES501 2.2 78.6 1.0
FE2 A:FES501 3.0 78.6 1.0
SG A:CYS333 3.1 73.1 1.0
SG A:CYS352 3.1 75.9 1.0
CB A:CYS338 3.7 71.9 1.0
O A:HIS335 3.8 73.2 1.0
CB A:CYS354 3.8 73.7 1.0
CB A:CYS352 3.9 75.9 1.0
N A:HIS355 3.9 71.8 1.0
N A:CYS338 4.2 71.9 1.0
ND1 A:HIS355 4.3 71.8 1.0
CB A:HIS355 4.4 71.8 1.0
SG A:CYS338 4.4 71.9 1.0
OG A:SER357 4.4 75.8 1.0
CB A:CYS333 4.4 73.1 1.0
CA A:CYS338 4.5 71.9 1.0
N A:CYS354 4.5 73.7 1.0
CA A:CYS354 4.6 73.7 1.0
CA A:HIS355 4.6 71.8 1.0
C A:CYS354 4.6 73.7 1.0
O A:CYS338 4.6 71.9 1.0
SG A:CYS354 4.8 73.7 1.0
CG A:HIS355 4.8 71.8 1.0
C A:CYS338 4.9 71.9 1.0

Iron binding site 2 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 2 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:78.6
occ:1.00
FE2 A:FES501 0.0 78.6 1.0
S2 A:FES501 2.2 78.6 1.0
S1 A:FES501 2.2 78.6 1.0
ND1 A:HIS335 2.7 73.2 1.0
ND1 A:HIS355 2.8 71.8 1.0
O A:HIS335 2.9 73.2 1.0
FE1 A:FES501 3.0 78.6 1.0
CG A:HIS355 3.2 71.8 1.0
CB A:HIS355 3.2 71.8 1.0
CE1 A:HIS335 3.3 73.2 1.0
CB A:LEU336 3.7 69.0 1.0
CE1 A:HIS355 3.8 71.8 1.0
C A:HIS335 3.8 73.2 1.0
CG A:HIS335 3.9 73.2 1.0
CD2 A:HIS355 4.2 71.8 1.0
CA A:HIS355 4.4 71.8 1.0
CB A:HIS335 4.4 73.2 1.0
N A:HIS355 4.4 71.8 1.0
NE2 A:HIS355 4.5 71.8 1.0
CD2 A:LEU336 4.5 69.0 1.0
CA A:LEU336 4.5 69.0 1.0
N A:LEU336 4.5 69.0 1.0
CG A:LEU336 4.6 69.0 1.0
NE2 A:HIS335 4.6 73.2 1.0
CA A:HIS335 4.7 73.2 1.0
SG A:CYS333 4.8 73.1 1.0
OG A:SER357 4.8 75.8 1.0
C A:LEU336 4.8 69.0 1.0
CD2 A:HIS335 4.9 73.2 1.0
CG A:PRO371 4.9 74.4 1.0
CB A:CYS354 4.9 73.7 1.0
CD1 A:LEU336 4.9 69.0 1.0

Iron binding site 3 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 3 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe801

b:38.5
occ:1.00
FE V:HAS801 0.0 38.5 1.0
NC V:HAS801 1.9 38.5 1.0
ND V:HAS801 1.9 38.5 1.0
NA V:HAS801 2.0 38.5 1.0
NB V:HAS801 2.0 38.5 1.0
NE2 V:HIS397 2.7 33.2 1.0
C1C V:HAS801 3.0 38.5 1.0
C4C V:HAS801 3.0 38.5 1.0
C1D V:HAS801 3.0 38.5 1.0
C4D V:HAS801 3.0 38.5 1.0
C1A V:HAS801 3.0 38.5 1.0
C4A V:HAS801 3.0 38.5 1.0
C4B V:HAS801 3.0 38.5 1.0
C1B V:HAS801 3.0 38.5 1.0
CHA V:HAS801 3.4 38.5 1.0
CHC V:HAS801 3.4 38.5 1.0
CHD V:HAS801 3.4 38.5 1.0
CHB V:HAS801 3.4 38.5 1.0
CE1 V:HIS397 3.6 33.2 1.0
CD2 V:HIS397 3.8 33.2 1.0
CU V:CU803 4.0 47.2 1.0
C2D V:HAS801 4.2 38.5 1.0
C3D V:HAS801 4.2 38.5 1.0
C2C V:HAS801 4.2 38.5 1.0
C3C V:HAS801 4.2 38.5 1.0
C2A V:HAS801 4.2 38.5 1.0
C2B V:HAS801 4.2 38.5 1.0
C3A V:HAS801 4.2 38.5 1.0
C3B V:HAS801 4.2 38.5 1.0
ND1 V:HIS397 4.8 33.2 1.0
CE1 V:HIS264 4.8 31.9 1.0
CG V:HIS397 4.9 33.2 1.0
CE1 V:HIS314 4.9 37.2 1.0
NE2 V:HIS313 4.9 40.2 1.0
CG1 V:VAL401 4.9 33.9 1.0
ND1 V:HIS264 5.0 31.9 1.0
CG1 V:VAL267 5.0 32.4 1.0

Iron binding site 4 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 4 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe802

b:35.3
occ:1.00
FE V:HAS802 0.0 35.3 1.0
NA V:HAS802 2.0 35.3 1.0
ND V:HAS802 2.0 35.3 1.0
NC V:HAS802 2.0 35.3 1.0
NB V:HAS802 2.0 35.3 1.0
NE2 V:HIS399 2.7 33.8 1.0
NE2 V:HIS86 2.7 28.5 1.0
C1A V:HAS802 3.0 35.3 1.0
C1C V:HAS802 3.0 35.3 1.0
C4D V:HAS802 3.0 35.3 1.0
C4B V:HAS802 3.0 35.3 1.0
C1D V:HAS802 3.0 35.3 1.0
C4A V:HAS802 3.0 35.3 1.0
C4C V:HAS802 3.0 35.3 1.0
C1B V:HAS802 3.0 35.3 1.0
CD2 V:HIS86 3.3 28.5 1.0
CHC V:HAS802 3.3 35.3 1.0
CHA V:HAS802 3.3 35.3 1.0
CHD V:HAS802 3.4 35.3 1.0
CHB V:HAS802 3.4 35.3 1.0
CD2 V:HIS399 3.5 33.8 1.0
CE1 V:HIS399 3.6 33.8 1.0
CE1 V:HIS86 3.9 28.5 1.0
C2A V:HAS802 4.2 35.3 1.0
C3D V:HAS802 4.2 35.3 1.0
C2D V:HAS802 4.2 35.3 1.0
C3A V:HAS802 4.2 35.3 1.0
C2C V:HAS802 4.2 35.3 1.0
C3B V:HAS802 4.2 35.3 1.0
C2B V:HAS802 4.2 35.3 1.0
C3C V:HAS802 4.3 35.3 1.0
CG V:HIS86 4.5 28.5 1.0
CG V:HIS399 4.7 33.8 1.0
ND1 V:HIS399 4.7 33.8 1.0
ND1 V:HIS86 4.8 28.5 1.0

Iron binding site 5 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 5 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe804

b:20.0
occ:1.00
FE V:HEC804 0.0 20.0 1.0
NA V:HEC804 2.1 20.0 1.0
NB V:HEC804 2.1 20.0 1.0
NC V:HEC804 2.1 20.0 1.0
ND V:HEC804 2.1 20.0 1.0
C4C V:HEC804 3.1 20.0 1.0
C4B V:HEC804 3.1 20.0 1.0
C1A V:HEC804 3.1 20.0 1.0
C4A V:HEC804 3.1 20.0 1.0
C4D V:HEC804 3.1 20.0 1.0
C1D V:HEC804 3.1 20.0 1.0
C1B V:HEC804 3.1 20.0 1.0
C1C V:HEC804 3.1 20.0 1.0
CHA V:HEC804 3.5 20.0 1.0
CHB V:HEC804 3.5 20.0 1.0
CHD V:HEC804 3.5 20.0 1.0
CHC V:HEC804 3.5 20.0 1.0
C3C V:HEC804 4.4 20.0 1.0
C3B V:HEC804 4.4 20.0 1.0
C2A V:HEC804 4.4 20.0 1.0
C3A V:HEC804 4.4 20.0 1.0
C3D V:HEC804 4.4 20.0 1.0
C2D V:HEC804 4.4 20.0 1.0
C2B V:HEC804 4.5 20.0 1.0
C2C V:HEC804 4.5 20.0 1.0

Iron binding site 6 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 6 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Fe601

b:22.1
occ:1.00
FE b:HEM601 0.0 22.1 1.0
NB b:HEM601 2.0 22.1 1.0
NC b:HEM601 2.1 22.1 1.0
NA b:HEM601 2.1 22.1 1.0
ND b:HEM601 2.1 22.1 1.0
NE2 b:HIS226 2.7 27.5 1.0
NE2 b:HIS123 2.7 27.8 1.0
C4B b:HEM601 2.9 22.1 1.0
CD2 b:HIS123 3.0 27.8 1.0
C1C b:HEM601 3.0 22.1 1.0
C1B b:HEM601 3.0 22.1 1.0
C4D b:HEM601 3.0 22.1 1.0
C4A b:HEM601 3.0 22.1 1.0
C1A b:HEM601 3.0 22.1 1.0
C4C b:HEM601 3.1 22.1 1.0
C1D b:HEM601 3.1 22.1 1.0
CHC b:HEM601 3.3 22.1 1.0
CHA b:HEM601 3.4 22.1 1.0
CHB b:HEM601 3.4 22.1 1.0
CHD b:HEM601 3.5 22.1 1.0
CE1 b:HIS226 3.6 27.5 1.0
CD2 b:HIS226 3.6 27.5 1.0
CE1 b:HIS123 4.0 27.8 1.0
C3B b:HEM601 4.1 22.1 1.0
C2B b:HEM601 4.2 22.1 1.0
C2C b:HEM601 4.2 22.1 1.0
C3A b:HEM601 4.2 22.1 1.0
C3D b:HEM601 4.2 22.1 1.0
C3C b:HEM601 4.3 22.1 1.0
C2A b:HEM601 4.3 22.1 1.0
CG b:HIS123 4.3 27.8 1.0
C2D b:HEM601 4.3 22.1 1.0
ND1 b:HIS226 4.7 27.5 1.0
ND1 b:HIS123 4.7 27.8 1.0
CG b:HIS226 4.8 27.5 1.0

Iron binding site 7 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 7 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Fe602

b:22.5
occ:1.00
FE b:HEM602 0.0 22.5 1.0
NB b:HEM602 2.0 22.5 1.0
NC b:HEM602 2.1 22.5 1.0
NA b:HEM602 2.1 22.5 1.0
ND b:HEM602 2.1 22.5 1.0
NE2 b:HIS211 2.6 27.0 1.0
NE2 b:HIS109 2.7 23.7 1.0
C4B b:HEM602 3.0 22.5 1.0
C1B b:HEM602 3.0 22.5 1.0
C1C b:HEM602 3.0 22.5 1.0
C4D b:HEM602 3.0 22.5 1.0
C4A b:HEM602 3.1 22.5 1.0
C1A b:HEM602 3.1 22.5 1.0
C4C b:HEM602 3.1 22.5 1.0
C1D b:HEM602 3.1 22.5 1.0
CE1 b:HIS211 3.1 27.0 1.0
CHC b:HEM602 3.4 22.5 1.0
CHA b:HEM602 3.4 22.5 1.0
CE1 b:HIS109 3.4 23.7 1.0
CHB b:HEM602 3.4 22.5 1.0
CHD b:HEM602 3.5 22.5 1.0
CD2 b:HIS211 3.7 27.0 1.0
CD2 b:HIS109 3.8 23.7 1.0
C2B b:HEM602 4.2 22.5 1.0
C3B b:HEM602 4.2 22.5 1.0
C2C b:HEM602 4.2 22.5 1.0
ND1 b:HIS211 4.3 27.0 1.0
C3C b:HEM602 4.3 22.5 1.0
C3A b:HEM602 4.3 22.5 1.0
C3D b:HEM602 4.3 22.5 1.0
C2A b:HEM602 4.3 22.5 1.0
C2D b:HEM602 4.3 22.5 1.0
OE2 b:GLU154 4.4 31.0 1.0
CG b:HIS211 4.6 27.0 1.0
ND1 b:HIS109 4.6 23.7 1.0
CG b:HIS109 4.8 23.7 1.0

Iron binding site 8 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 8 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:40.6
occ:1.00
FE1 B:FES501 0.0 40.6 1.0
S1 B:FES501 2.2 40.6 1.0
S2 B:FES501 2.2 40.6 1.0
SG B:CYS352 3.0 40.0 1.0
FE2 B:FES501 3.1 40.6 1.0
SG B:CYS333 3.1 38.0 1.0
OG B:SER357 3.3 36.0 1.0
CB B:CYS352 3.4 40.0 1.0
O B:HIS335 3.6 36.6 1.0
CB B:CYS333 3.8 38.0 1.0
CB B:SER357 4.2 36.0 1.0
N B:HIS355 4.4 37.6 1.0
CB B:HIS355 4.6 37.6 1.0
ND1 B:HIS335 4.6 36.6 1.0
N B:GLN356 4.7 38.1 1.0
C B:HIS335 4.7 36.6 1.0
N B:SER357 4.8 36.0 1.0
CA B:HIS355 4.8 37.6 1.0
C B:HIS355 4.9 37.6 1.0
CB B:HIS335 4.9 36.6 1.0
CA B:CYS352 4.9 40.0 1.0
ND1 B:HIS355 5.0 37.6 1.0
CE2 B:PHE359 5.0 36.4 1.0

Iron binding site 9 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 9 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:40.6
occ:1.00
FE2 B:FES501 0.0 40.6 1.0
S2 B:FES501 2.2 40.6 1.0
S1 B:FES501 2.2 40.6 1.0
ND1 B:HIS335 2.7 36.6 1.0
ND1 B:HIS355 2.7 37.6 1.0
O B:HIS335 2.8 36.6 1.0
FE1 B:FES501 3.1 40.6 1.0
CB B:HIS355 3.2 37.6 1.0
CG B:HIS355 3.2 37.6 1.0
CE1 B:HIS335 3.3 36.6 1.0
CE1 B:HIS355 3.7 37.6 1.0
C B:HIS335 3.8 36.6 1.0
CG B:HIS335 3.9 36.6 1.0
CB B:LEU336 4.0 35.0 1.0
CD2 B:HIS355 4.3 37.6 1.0
N B:HIS355 4.3 37.6 1.0
CA B:HIS355 4.3 37.6 1.0
CB B:HIS335 4.4 36.6 1.0
NE2 B:HIS355 4.5 37.6 1.0
NE2 B:HIS335 4.5 36.6 1.0
CD2 B:LEU336 4.6 35.0 1.0
N B:LEU336 4.6 35.0 1.0
CA B:HIS335 4.7 36.6 1.0
CG B:LEU336 4.8 35.0 1.0
SG B:CYS333 4.8 38.0 1.0
CA B:LEU336 4.8 35.0 1.0
CB B:CYS354 4.8 40.0 1.0
OG B:SER357 4.8 36.0 1.0
CD2 B:HIS335 4.8 36.6 1.0
CG B:PRO371 4.9 36.2 1.0
CD1 B:LEU336 5.0 35.0 1.0
C B:HIS355 5.0 37.6 1.0

Iron binding site 10 out of 16 in 6hwh

Go back to Iron Binding Sites List in 6hwh
Iron binding site 10 out of 16 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Fe801

b:29.6
occ:1.00
FE Q:HAS801 0.0 29.6 1.0
NC Q:HAS801 1.9 29.6 1.0
ND Q:HAS801 2.0 29.6 1.0
NA Q:HAS801 2.0 29.6 1.0
NB Q:HAS801 2.0 29.6 1.0
NE2 Q:HIS397 2.7 21.5 1.0
C4D Q:HAS801 3.0 29.6 1.0
C1C Q:HAS801 3.0 29.6 1.0
C4C Q:HAS801 3.0 29.6 1.0
C4A Q:HAS801 3.0 29.6 1.0
C1A Q:HAS801 3.0 29.6 1.0
C4B Q:HAS801 3.0 29.6 1.0
C1D Q:HAS801 3.0 29.6 1.0
C1B Q:HAS801 3.0 29.6 1.0
CHA Q:HAS801 3.3 29.6 1.0
CHD Q:HAS801 3.4 29.6 1.0
CHC Q:HAS801 3.4 29.6 1.0
CHB Q:HAS801 3.4 29.6 1.0
CD2 Q:HIS397 3.6 21.5 1.0
CE1 Q:HIS397 3.7 21.5 1.0
C3D Q:HAS801 4.2 29.6 1.0
C2C Q:HAS801 4.2 29.6 1.0
C3C Q:HAS801 4.2 29.6 1.0
C2D Q:HAS801 4.2 29.6 1.0
C3A Q:HAS801 4.2 29.6 1.0
C2A Q:HAS801 4.2 29.6 1.0
C2B Q:HAS801 4.2 29.6 1.0
C3B Q:HAS801 4.3 29.6 1.0
CU Q:CU803 4.6 40.6 1.0
ND1 Q:HIS397 4.8 21.5 1.0
CG Q:HIS397 4.8 21.5 1.0
CE1 Q:HIS314 4.8 24.5 1.0
CE1 Q:HIS264 4.9 24.0 1.0
CG1 Q:VAL401 4.9 27.8 1.0
CG1 Q:VAL267 5.0 23.2 1.0
ND1 Q:HIS264 5.0 24.0 1.0

Reference:

B.Wiseman, R.G.Nitharwal, O.Fedotovskaya, J.Schafer, H.Guo, Q.Kuang, S.Benlekbir, D.Sjostrand, P.Adelroth, J.L.Rubinstein, P.Brzezinski, M.Hogbom. Structure of A Functional Obligate Complex III2IV2RESPIRATORY Supercomplex From Mycobacterium Smegmatis. Nat. Struct. Mol. Biol. V. 25 1128 2018.
ISSN: ESSN 1545-9985
PubMed: 30518849
DOI: 10.1038/S41594-018-0160-3
Page generated: Sun Dec 13 16:29:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy