Atomistry » Iron » PDB 6hsm-6i92 » 6i2z
Atomistry »
  Iron »
    PDB 6hsm-6i92 »
      6i2z »

Iron in PDB 6i2z: Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor

Protein crystallography data

The structure of Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor, PDB code: 6i2z was solved by F.Germani, A.De Schutter, B.Cuypers, H.Berghmans, M.-L.Van Hauwaert, S.Bruno, A.Mozzarelli, L.Moens, S.Van Doorslaer, M.Bolognesi, A.Pesce, S.Dewilde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.81 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 104.960, 86.720, 41.820, 90.00, 93.34, 90.00
R / Rfree (%) 20.9 / 24

Iron Binding Sites:

The binding sites of Iron atom in the Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor (pdb code 6i2z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor, PDB code: 6i2z:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6i2z

Go back to Iron Binding Sites List in 6i2z
Iron binding site 1 out of 2 in the Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:39.0
occ:1.00
FE A:HEM200 0.0 39.0 1.0
ND A:HEM200 1.9 42.1 1.0
NA A:HEM200 2.0 41.8 1.0
NE2 A:HIS99 2.1 26.4 1.0
NB A:HEM200 2.1 40.5 1.0
NC A:HEM200 2.1 41.4 1.0
CE1 A:HIS99 2.8 27.9 1.0
C1D A:HEM200 2.9 42.2 1.0
C4D A:HEM200 2.9 44.0 1.0
C1A A:HEM200 3.0 43.1 1.0
C4A A:HEM200 3.0 41.7 1.0
O A:HOH308 3.1 10.5 1.0
C1B A:HEM200 3.1 40.8 1.0
C4B A:HEM200 3.1 39.2 1.0
C4C A:HEM200 3.1 40.0 1.0
C1C A:HEM200 3.1 38.9 1.0
CD2 A:HIS99 3.3 28.4 1.0
CHA A:HEM200 3.3 43.8 1.0
CHD A:HEM200 3.4 41.1 1.0
CHB A:HEM200 3.4 41.6 1.0
CHC A:HEM200 3.5 39.3 1.0
ND1 A:HIS99 4.0 28.9 1.0
C2D A:HEM200 4.2 42.7 1.0
C3D A:HEM200 4.2 44.8 1.0
CD1 A:LEU65 4.2 62.0 1.0
C2A A:HEM200 4.2 42.7 1.0
C3A A:HEM200 4.2 41.7 1.0
CG A:HIS99 4.3 28.9 1.0
C2B A:HEM200 4.3 39.0 1.0
C2C A:HEM200 4.3 37.4 1.0
C3C A:HEM200 4.3 37.9 1.0
C3B A:HEM200 4.4 37.9 1.0

Iron binding site 2 out of 2 in 6i2z

Go back to Iron Binding Sites List in 6i2z
Iron binding site 2 out of 2 in the Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Isolated Globin Domain of the Bordetella Pertussis Globin-Coupled Sensor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe200

b:63.6
occ:1.00
FE B:HEM200 0.0 63.6 1.0
ND B:HEM200 1.9 70.4 1.0
NA B:HEM200 2.0 64.5 1.0
NC B:HEM200 2.1 66.3 1.0
NB B:HEM200 2.1 62.4 1.0
NE2 B:HIS99 2.3 46.3 1.0
O B:HOH302 2.9 1.0 1.0
C1D B:HEM200 2.9 73.5 1.0
C4D B:HEM200 2.9 71.8 1.0
C1A B:HEM200 3.0 65.9 1.0
C4A B:HEM200 3.0 65.9 1.0
CE1 B:HIS99 3.0 49.2 1.0
C1B B:HEM200 3.1 62.3 1.0
C4B B:HEM200 3.1 60.9 1.0
C4C B:HEM200 3.1 69.2 1.0
C1C B:HEM200 3.1 64.9 1.0
CD2 B:HIS99 3.3 48.2 1.0
CHA B:HEM200 3.4 69.9 1.0
CHD B:HEM200 3.4 72.9 1.0
CHB B:HEM200 3.4 65.3 1.0
CHC B:HEM200 3.5 64.2 1.0
ND1 B:HIS99 4.1 49.2 1.0
C2D B:HEM200 4.2 74.4 1.0
C2A B:HEM200 4.2 66.5 1.0
C3D B:HEM200 4.2 73.8 1.0
C3A B:HEM200 4.2 67.0 1.0
CG B:HIS99 4.3 48.2 1.0
C3C B:HEM200 4.3 66.7 1.0
C2C B:HEM200 4.3 64.4 1.0
C2B B:HEM200 4.3 58.2 1.0
C3B B:HEM200 4.4 56.8 1.0

Reference:

F.Germani, M.Nardini, A.De Schutter, B.Cuypers, H.Berghmans, M.L.Van Hauwaert, B.Stefano, A.Mozzarelli, L.Moens, S.Van Doorslaer, M.Bolognesi, A.Pesce, S.Dewilde. Structural and Functional Characterization of the Globin-Coupled Sensors of Azotobacter Vinelandii and Bordetella Pertussis. Antioxid.Redox Signal. 2019.
ISSN: ESSN 1557-7716
PubMed: 31559835
DOI: 10.1089/ARS.2018.7690
Page generated: Sun Dec 13 16:29:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy