Atomistry » Iron » PDB 6htk-6i93 » 6i36
Atomistry »
  Iron »
    PDB 6htk-6i93 »
      6i36 »

Iron in PDB 6i36: Sixty Minutes Iron Loaded Frog M Ferritin

Enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin

All present enzymatic activity of Sixty Minutes Iron Loaded Frog M Ferritin:
1.16.3.1;

Protein crystallography data

The structure of Sixty Minutes Iron Loaded Frog M Ferritin, PDB code: 6i36 was solved by S.Mangani, F.Di Pisa, C.Pozzi, P.Turano, D.Lalli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.64 / 1.59
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 184.200, 184.200, 184.200, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 20.5

Other elements in 6i36:

The structure of Sixty Minutes Iron Loaded Frog M Ferritin also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Chlorine (Cl) 15 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Sixty Minutes Iron Loaded Frog M Ferritin (pdb code 6i36). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Sixty Minutes Iron Loaded Frog M Ferritin, PDB code: 6i36:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 1 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:18.7
occ:0.50
 O A:HOH305 1.8 27.6 1.0
OE2 A:GLU58 1.9 10.7 0.5
O A:HOH311 1.9 8.9 0.5
OE2 A:GLU103 2.3 12.4 1.0
OE1 A:GLU103 2.4 12.8 1.0
OE1 A:GLU58 2.5 10.6 0.5
O A:HOH335 2.5 26.9 1.0
OE2 A:GLU58 2.6 10.9 0.5
CD A:GLU58 2.6 10.6 0.5
CD A:GLU103 2.7 11.6 1.0
CD A:GLU58 2.8 10.6 0.5
OE1 A:GLU58 3.2 10.4 0.5
FE A:FE2202 3.5 12.4 0.5
CG A:GLU58 3.8 10.3 0.5
O A:HOH349 3.9 30.3 1.0
NE2 A:GLN137 4.0 16.1 1.0
CG A:GLU58 4.0 10.3 0.5
OE1 A:GLN137 4.1 16.4 1.0
CG A:GLU103 4.2 10.3 1.0
OD2 A:ASP140 4.2 9.6 0.7
OE2 A:GLU57 4.3 14.3 0.7
CE2 A:TYR30 4.4 9.1 1.0
CD A:GLN137 4.5 14.7 1.0
CE1 A:HIS61 4.5 12.3 1.0
ND1 A:HIS61 4.7 11.8 1.0
O A:HOH310 4.7 12.2 1.0
OH A:TYR30 4.7 10.4 1.0
CD A:GLU57 4.8 13.8 0.7
ND1 A:HIS54 4.9 15.3 1.0

Iron binding site 2 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 2 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:12.4
occ:0.50
 OE1 A:GLU23 2.0 9.2 1.0
OE1 A:GLU58 2.0 10.4 0.5
O A:HOH311 2.1 8.9 0.5
O A:HOH310 2.2 12.2 1.0
ND1 A:HIS61 2.2 11.8 1.0
OE2 A:GLU58 2.5 10.9 0.5
OE1 A:GLU58 2.6 10.6 0.5
CD A:GLU58 2.8 10.6 0.5
CD A:GLU23 2.8 8.9 1.0
OE2 A:GLU23 3.0 9.6 1.0
CE1 A:HIS61 3.0 12.3 1.0
CD A:GLU58 3.1 10.6 0.5
CG A:HIS61 3.3 11.3 1.0
OE2 A:GLU58 3.5 10.7 0.5
FE A:FE2201 3.5 18.7 0.5
CB A:HIS61 3.8 10.6 1.0
CG1 A:VAL106 3.9 8.0 1.0
OE1 A:GLN137 4.1 16.4 1.0
CG A:GLU58 4.1 10.3 0.5
NE2 A:HIS61 4.2 12.5 1.0
CG A:GLU23 4.2 8.4 1.0
O A:HOH472 4.3 12.6 1.0
O A:HOH305 4.4 27.6 1.0
CD2 A:HIS61 4.4 11.9 1.0
CG A:GLU58 4.4 10.3 0.5
CA A:GLU58 4.4 10.1 0.5
CA A:GLU58 4.4 10.1 0.5
CB A:GLU58 4.5 10.2 0.5
O A:HOH349 4.5 30.3 1.0
CB A:GLU58 4.6 10.1 0.5
CB A:GLU23 4.7 7.7 1.0
CD A:GLN137 5.0 14.7 1.0
NE2 A:GLN137 5.0 16.1 1.0
CB A:VAL106 5.0 7.7 1.0

Iron binding site 3 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 3 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:7.6
occ:0.20
 NE2 A:HIS169 2.3 8.6 1.0
CL A:CL215 2.4 11.2 0.2
O A:HOH504 2.4 23.3 0.2
CE1 A:HIS169 3.1 8.8 1.0
CD2 A:HIS169 3.3 9.0 1.0
ND1 A:HIS169 4.3 9.0 1.0
CG A:HIS169 4.4 8.9 1.0
O A:HOH509 4.5 33.1 1.0

Iron binding site 4 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 4 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe204

b:51.7
occ:0.50
 OE1 A:GLU60 2.1 17.1 0.7
O A:HOH479 2.5 47.3 1.0
CD A:GLU60 3.3 16.2 0.7
OE2 A:GLU60 3.8 17.8 0.7
O A:HOH451 4.0 31.5 1.0
CA A:GLU57 4.3 10.9 1.0
CG A:GLU60 4.5 14.8 1.0
CG A:GLU57 4.6 13.2 1.0
CB A:GLU57 4.6 11.8 1.0
CB A:GLU60 4.6 12.9 1.0

Iron binding site 5 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 5 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe207

b:11.7
occ:0.20
 O A:HOH517 2.0 10.4 1.0
O A:HOH324 2.1 7.7 1.0
OE2 A:GLU130 3.8 9.6 1.0
O A:HOH565 4.2 10.4 1.0
OE1 A:GLU130 4.3 9.9 1.0
O A:HOH398 4.3 13.5 1.0
CD A:GLU130 4.5 9.7 1.0

Iron binding site 6 out of 6 in 6i36

Go back to Iron Binding Sites List in 6i36
Iron binding site 6 out of 6 in the Sixty Minutes Iron Loaded Frog M Ferritin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Sixty Minutes Iron Loaded Frog M Ferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe210

b:15.4
occ:0.20
 O A:HOH414 1.9 26.9 1.0
O A:HOH313 2.1 28.5 1.0
OD1 A:ASP127 3.8 10.9 1.0
OG A:SER131 4.2 13.4 1.0
OE1 A:GLU130 4.3 9.9 1.0
O A:HOH444 4.8 17.3 0.8
CG A:ASP127 4.9 10.6 1.0
CB A:GLU130 5.0 9.6 1.0

Reference:

C.Pozzi, F.Di Pisa, D.Lalli, C.Rosa, E.Theil, P.Turano, S.Mangani. Time-Lapse Anomalous X-Ray Diffraction Shows How Fe(2+) Substrate Ions Move Through Ferritin Protein Nanocages to Oxidoreductase Sites. Acta Crystallogr.,Sect.D V. 71 941 2015.
ISSN: ISSN 0907-4449
PubMed: 25849404
DOI: 10.1107/S1399004715002333
Page generated: Tue Aug 6 22:03:58 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy