Iron in PDB 6ia6: Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa

The structure of Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa, PDB code: 6ia6 was solved by T.Y.Lin, S.Glatt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.31 / 2.70
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	73.540, 160.740, 92.990, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 26.9

The binding sites of Iron atom in the Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa (pdb code 6ia6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa, PDB code: 6ia6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:0.1 occ:0.50 FE1 A:FES502 0.0 0.1 0.5 S2 A:FES502 2.2 0.3 0.5 S1 A:FES502 2.2 0.4 0.5 FE2 A:FES502 3.1 0.2 0.5 H A:ARG173 3.7 0.3 1.0 HG A:CYS27 3.8 0.2 1.0 HA A:ARG173 4.1 0.4 1.0 N A:ARG173 4.5 97.5 1.0 HB3 A:TYR29 4.5 0.8 1.0 HB2 A:TYR29 4.5 0.8 1.0 HA A:CYS30 4.7 0.4 1.0 CA A:ARG173 4.8 96.8 1.0 SG A:CYS27 4.9 95.8 1.0 HG2 A:ARG173 5.0 0.2 1.0 CB A:TYR29 5.0 0.3 1.0

Iron binding site 2 out of 2 in the Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Bacterial Dehalococcoides Mccartyi ELP3 with Desulfo-Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:0.2 occ:0.50 FE2 A:FES502 0.0 0.2 0.5 S2 A:FES502 2.2 0.3 0.5 S1 A:FES502 2.2 0.4 0.5 SG A:CYS30 2.3 0.5 1.0 HG A:CYS27 2.4 0.2 1.0 HB3 A:CYS27 2.7 0.7 1.0 HA A:CYS30 2.8 0.4 1.0 SG A:CYS27 3.0 95.8 1.0 FE1 A:FES502 3.1 0.1 0.5 CB A:CYS30 3.1 0.3 1.0 H A:CYS30 3.1 0.8 1.0 CA A:CYS30 3.2 99.3 1.0 N A:CYS30 3.2 0.3 1.0 CB A:CYS27 3.2 92.0 1.0 HB2 A:CYS30 3.3 0.2 1.0 HB2 A:CYS27 3.5 0.7 1.0 HB2 A:TYR29 3.9 0.8 1.0 HG2 A:ARG173 4.0 0.2 1.0 HB3 A:CYS30 4.0 0.2 1.0 C A:TYR29 4.0 0.2 1.0 H A:ARG173 4.2 0.3 1.0 HG3 A:ARG173 4.3 0.2 1.0 HB2 A:GLU172 4.4 0.5 1.0 HB3 A:TYR29 4.5 0.8 1.0 CB A:TYR29 4.5 0.3 1.0 HD2 A:PRO31 4.6 0.4 1.0 CG A:ARG173 4.6 0.3 1.0 O A:TYR29 4.6 99.7 1.0 CA A:CYS27 4.6 90.6 1.0 HB3 A:GLU172 4.7 0.5 1.0 H A:TYR29 4.7 0.5 1.0 C A:CYS30 4.7 90.0 1.0 CA A:TYR29 4.7 99.7 1.0 HD3 A:PRO31 4.7 0.4 1.0 N A:ARG173 4.8 97.5 1.0 HA A:ARG173 4.8 0.4 1.0 O A:CYS27 4.9 0.5 1.0 C A:CYS27 4.9 93.2 1.0 N A:TYR29 5.0 0.2 1.0 CB A:GLU172 5.0 94.3 1.0

T.Y.Lin, N.E.H.Abbassi, K.Zakrzewski, A.Chramiec-Glabik, M.Jemiola-Rzeminska, J.Rozycki, S.Glatt. The Elongator Subunit ELP3 Is A Non-Canonical Trna Acetyltransferase. Nat Commun V. 10 625 2019.
ISSN: ESSN 2041-1723
PubMed: 30733442
DOI: 10.1038/S41467-019-08579-2