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Iron in PDB 6ied: Crystal Structure of Heme A Synthase From Bacillus Subtilis

Protein crystallography data

The structure of Crystal Structure of Heme A Synthase From Bacillus Subtilis, PDB code: 6ied was solved by S.Niwa, K.Takeda, M.Kosugi, E.Tsutsumi, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.00
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 90.528, 90.528, 147.230, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 24.5

Other elements in 6ied:

The structure of Crystal Structure of Heme A Synthase From Bacillus Subtilis also contains other interesting chemical elements:

Copper (Cu) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Heme A Synthase From Bacillus Subtilis (pdb code 6ied). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Heme A Synthase From Bacillus Subtilis, PDB code: 6ied:

Iron binding site 1 out of 1 in 6ied

Go back to Iron Binding Sites List in 6ied
Iron binding site 1 out of 1 in the Crystal Structure of Heme A Synthase From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Heme A Synthase From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:39.3
occ:1.00
FE A:HEM601 0.0 39.3 1.0
NA A:HEM601 2.0 37.6 1.0
NB A:HEM601 2.0 37.8 1.0
NC A:HEM601 2.0 39.6 1.0
ND A:HEM601 2.0 38.9 1.0
NE2 A:HIS278 2.1 36.5 1.0
NE2 A:HIS216 2.2 38.6 1.0
C4C A:HEM601 3.0 39.8 1.0
C1C A:HEM601 3.0 39.5 1.0
C1B A:HEM601 3.1 36.8 1.0
C1D A:HEM601 3.1 37.6 1.0
C4D A:HEM601 3.1 38.6 1.0
C4A A:HEM601 3.1 38.2 1.0
C1A A:HEM601 3.1 37.1 1.0
CD2 A:HIS278 3.1 34.7 1.0
C4B A:HEM601 3.1 37.8 1.0
CD2 A:HIS216 3.1 37.3 1.0
CE1 A:HIS216 3.2 38.4 1.0
CE1 A:HIS278 3.2 34.7 1.0
CHB A:HEM601 3.4 37.5 1.0
CHD A:HEM601 3.4 38.8 1.0
CHA A:HEM601 3.4 38.3 1.0
CHC A:HEM601 3.4 39.2 1.0
CG A:HIS278 4.2 34.1 1.0
ND1 A:HIS278 4.3 34.3 1.0
ND1 A:HIS216 4.3 38.0 1.0
CG A:HIS216 4.3 36.7 1.0
C3A A:HEM601 4.3 37.4 1.0
C2A A:HEM601 4.3 36.7 1.0
C3B A:HEM601 4.3 37.4 1.0
C2B A:HEM601 4.3 37.2 1.0
C2C A:HEM601 4.3 39.3 1.0
C3D A:HEM601 4.3 37.8 1.0
C3C A:HEM601 4.4 39.9 1.0
C2D A:HEM601 4.4 37.0 1.0
NE2 A:GLN258 4.8 32.6 1.0
CA A:GLY179 4.8 26.3 1.0

Reference:

S.Niwa, K.Takeda, M.Kosugi, E.Tsutsumi, T.Mogi, K.Miki. Crystal Structure of Heme A Synthase Frombacillus Subtilis. Proc. Natl. Acad. Sci. V. 115 11953 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30397130
DOI: 10.1073/PNAS.1813346115
Page generated: Sun Dec 13 16:34:15 2020

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