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Iron in PDB 6igz: Structure of Psi-Lhci

Other elements in 6igz:

The structure of Structure of Psi-Lhci also contains other interesting chemical elements:

Magnesium (Mg) 244 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of Psi-Lhci (pdb code 6igz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of Psi-Lhci, PDB code: 6igz:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 6igz

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Iron binding site 1 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:48.6
occ:1.00
FE1 B:SF4802 0.0 48.6 1.0
S3 B:SF4802 2.2 43.5 1.0
S4 B:SF4802 2.2 43.5 1.0
S2 B:SF4802 2.2 44.1 1.0
CB B:CYS568 2.9 30.0 1.0
SG B:CYS568 3.0 30.0 1.0
FE3 B:SF4802 3.1 44.0 1.0
FE4 B:SF4802 3.1 51.2 1.0
FE2 B:SF4802 3.1 48.8 1.0
S1 B:SF4802 3.8 43.9 1.0
CA B:CYS568 3.9 51.2 1.0
O B:THR567 3.9 52.7 1.0
CZ3 B:TRP667 4.1 30.0 1.0
CG1 A:ILE725 4.4 30.0 1.0
C B:THR567 4.6 53.3 1.0
N B:CYS568 4.6 52.9 1.0
CH2 B:TRP667 4.7 30.0 1.0
NH2 A:ARG729 4.8 30.0 1.0
CE3 B:TRP667 4.8 30.0 1.0
CG2 A:ILE725 4.8 30.0 1.0

Iron binding site 2 out of 12 in 6igz

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Iron binding site 2 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:48.8
occ:1.00
FE2 B:SF4802 0.0 48.8 1.0
S3 B:SF4802 2.2 43.5 1.0
S1 B:SF4802 2.2 43.9 1.0
S4 B:SF4802 2.2 43.5 1.0
SG A:CYS589 2.8 30.0 1.0
FE3 B:SF4802 3.0 44.0 1.0
FE4 B:SF4802 3.1 51.2 1.0
FE1 B:SF4802 3.1 48.6 1.0
S2 B:SF4802 3.8 44.1 1.0
SG B:CYS559 3.9 30.0 1.0
CD1 B:ILE702 4.0 30.0 1.0
CB A:CYS589 4.1 30.0 1.0
NH2 B:ARG706 4.2 30.0 1.0
CG2 B:ILE702 4.5 30.0 1.0
CB B:CYS559 4.5 30.0 1.0
SG B:CYS568 4.5 30.0 1.0
CG1 B:ILE702 4.7 30.0 1.0
CA A:CYS589 4.9 52.0 1.0

Iron binding site 3 out of 12 in 6igz

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Iron binding site 3 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:44.0
occ:1.00
FE3 B:SF4802 0.0 44.0 1.0
S4 B:SF4802 2.2 43.5 1.0
S2 B:SF4802 2.2 44.1 1.0
S1 B:SF4802 2.2 43.9 1.0
SG A:CYS580 2.8 30.0 1.0
CB A:CYS580 2.8 30.0 1.0
FE2 B:SF4802 3.0 48.8 1.0
FE1 B:SF4802 3.1 48.6 1.0
FE4 B:SF4802 3.1 51.2 1.0
SG A:CYS589 3.6 30.0 1.0
S3 B:SF4802 3.7 43.5 1.0
CA A:CYS589 3.7 52.0 1.0
CB A:CYS589 3.8 30.0 1.0
N A:CYS580 3.8 49.5 1.0
CA A:CYS580 3.9 47.7 1.0
NH2 A:ARG729 4.3 30.0 1.0
N A:CYS589 4.5 51.3 1.0
N A:GLN590 4.8 52.3 1.0
C A:CYS589 4.8 52.5 1.0
O A:GLY582 4.9 51.6 1.0
C A:CYS580 5.0 49.2 1.0

Iron binding site 4 out of 12 in 6igz

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Iron binding site 4 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe802

b:51.2
occ:1.00
FE4 B:SF4802 0.0 51.2 1.0
S1 B:SF4802 2.2 43.9 1.0
S3 B:SF4802 2.2 43.5 1.0
S2 B:SF4802 2.2 44.1 1.0
SG B:CYS559 2.9 30.0 1.0
FE1 B:SF4802 3.1 48.6 1.0
FE3 B:SF4802 3.1 44.0 1.0
FE2 B:SF4802 3.1 48.8 1.0
O B:THR567 3.3 52.7 1.0
CB B:CYS559 3.5 30.0 1.0
S4 B:SF4802 3.8 43.5 1.0
SG A:CYS580 3.8 30.0 1.0
CA B:GLY561 4.1 45.3 1.0
C B:GLY561 4.1 54.4 1.0
N B:PRO562 4.3 52.6 1.0
N B:GLY561 4.3 51.0 1.0
C B:THR567 4.5 53.3 1.0
O B:GLY561 4.5 54.6 1.0
CD B:PRO562 4.6 30.0 1.0
CB B:CYS568 4.8 30.0 1.0
CA B:PRO562 4.8 45.2 1.0
CA B:CYS568 4.9 51.2 1.0
CB A:CYS580 4.9 30.0 1.0
OG1 B:THR567 5.0 30.0 1.0
CA B:CYS559 5.0 51.4 1.0
CB B:PRO562 5.0 30.0 1.0

Iron binding site 5 out of 12 in 6igz

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Iron binding site 5 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:57.6
occ:1.00
FE1 C:SF4101 0.0 57.6 1.0
S4 C:SF4101 2.2 48.0 1.0
S3 C:SF4101 2.2 47.7 1.0
S2 C:SF4101 2.2 49.7 1.0
CB C:CYS51 2.9 30.0 1.0
FE4 C:SF4101 3.1 53.4 1.0
FE2 C:SF4101 3.1 53.3 1.0
FE3 C:SF4101 3.1 52.8 1.0
N C:CYS51 3.1 55.7 1.0
CA C:CYS51 3.5 54.7 1.0
SG C:CYS51 3.6 30.0 1.0
S1 C:SF4101 3.8 48.4 1.0
CD C:PRO22 3.8 30.0 1.0
N C:LYS52 3.8 54.3 1.0
C C:CYS51 4.0 52.9 1.0
N C:GLY50 4.1 64.1 1.0
C C:GLY50 4.2 57.1 1.0
CG C:PRO22 4.4 30.0 1.0
N C:ARG53 4.4 56.0 1.0
N C:VAL49 4.5 64.8 1.0
CA C:GLY50 4.6 60.8 1.0
CA C:LYS52 4.9 54.0 1.0
CB C:VAL49 4.9 30.0 1.0
C C:VAL49 5.0 65.4 1.0
CB C:ARG53 5.0 30.0 1.0
CA C:CYS21 5.0 48.8 1.0
CG C:ARG53 5.0 30.0 1.0

Iron binding site 6 out of 12 in 6igz

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Iron binding site 6 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:53.3
occ:1.00
FE2 C:SF4101 0.0 53.3 1.0
S1 C:SF4101 2.2 48.4 1.0
S4 C:SF4101 2.2 48.0 1.0
S3 C:SF4101 2.2 47.7 1.0
SG C:CYS21 2.9 30.0 1.0
FE4 C:SF4101 3.1 53.4 1.0
FE3 C:SF4101 3.1 52.8 1.0
FE1 C:SF4101 3.1 57.6 1.0
CB C:CYS21 3.1 30.0 1.0
CA C:CYS21 3.7 48.8 1.0
S2 C:SF4101 3.8 49.7 1.0
OG1 C:THR23 4.1 30.0 1.0
CB C:VAL25 4.1 30.0 1.0
SG C:CYS54 4.1 30.0 1.0
CG2 C:VAL25 4.2 30.0 1.0
CD C:PRO22 4.4 30.0 1.0
C C:CYS21 4.6 54.6 1.0
CA C:CYS48 4.7 67.4 1.0
N C:VAL25 4.7 70.4 1.0
N C:PRO22 4.8 54.1 1.0
N C:CYS21 4.8 55.5 1.0
SG C:CYS48 4.8 30.0 1.0
CB C:CYS48 4.9 30.0 1.0

Iron binding site 7 out of 12 in 6igz

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Iron binding site 7 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:52.8
occ:1.00
FE3 C:SF4101 0.0 52.8 1.0
S2 C:SF4101 2.2 49.7 1.0
S1 C:SF4101 2.2 48.4 1.0
S4 C:SF4101 2.2 48.0 1.0
SG C:CYS54 2.7 30.0 1.0
FE4 C:SF4101 3.1 53.4 1.0
FE2 C:SF4101 3.1 53.3 1.0
FE1 C:SF4101 3.1 57.6 1.0
CB C:CYS54 3.5 30.0 1.0
S3 C:SF4101 3.8 47.7 1.0
N C:CYS54 3.8 58.0 1.0
N C:LYS52 3.9 54.3 1.0
CG2 C:VAL67 4.0 30.0 1.0
CA C:LYS52 4.1 54.0 1.0
CA C:CYS54 4.3 59.5 1.0
N C:ARG53 4.3 56.0 1.0
SG C:CYS21 4.5 30.0 1.0
C C:LYS52 4.6 56.4 1.0
N C:CYS51 4.9 55.7 1.0
C C:ARG53 4.9 58.1 1.0
C C:CYS51 5.0 52.9 1.0

Iron binding site 8 out of 12 in 6igz

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Iron binding site 8 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:53.4
occ:1.00
FE4 C:SF4101 0.0 53.4 1.0
S2 C:SF4101 2.2 49.7 1.0
S1 C:SF4101 2.2 48.4 1.0
S3 C:SF4101 2.2 47.7 1.0
CB C:CYS48 2.9 30.0 1.0
CA C:CYS48 3.1 67.4 1.0
FE3 C:SF4101 3.1 52.8 1.0
FE2 C:SF4101 3.1 53.3 1.0
FE1 C:SF4101 3.1 57.6 1.0
N C:VAL49 3.3 64.8 1.0
N C:GLY50 3.3 64.1 1.0
C C:CYS48 3.4 63.7 1.0
SG C:CYS48 3.7 30.0 1.0
S4 C:SF4101 3.8 48.0 1.0
CA C:GLY50 4.0 60.8 1.0
N C:CYS51 4.3 55.7 1.0
C C:VAL49 4.3 65.4 1.0
O C:CYS48 4.3 61.4 1.0
CA C:VAL49 4.3 64.6 1.0
N C:CYS48 4.5 69.3 1.0
C C:GLY50 4.5 57.1 1.0
CG2 C:VAL5 4.7 30.0 1.0
CG1 C:VAL67 4.9 30.0 1.0
CG2 C:VAL67 4.9 30.0 1.0
O C:ASP47 5.0 67.2 1.0

Iron binding site 9 out of 12 in 6igz

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Iron binding site 9 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:62.6
occ:1.00
FE1 C:SF4102 0.0 62.6 1.0
S2 C:SF4102 2.2 51.2 1.0
S3 C:SF4102 2.2 57.5 1.0
S4 C:SF4102 2.2 53.5 1.0
SG C:CYS58 3.0 30.0 1.0
FE2 C:SF4102 3.1 65.5 1.0
FE3 C:SF4102 3.1 72.5 1.0
FE4 C:SF4102 3.1 69.8 1.0
CB C:CYS58 3.4 30.0 1.0
CA C:CYS58 3.6 59.1 1.0
SG C:CYS17 3.8 30.0 1.0
S1 C:SF4102 3.8 84.5 1.0
CB C:SER64 3.8 30.0 1.0
CD C:PRO59 3.9 30.0 1.0
OG C:SER64 4.2 30.0 1.0
OG1 C:THR60 4.2 30.0 1.0
C C:CYS58 4.5 61.9 1.0
N C:PRO59 4.5 65.4 1.0
N C:CYS58 4.6 58.1 1.0
N C:SER64 4.7 57.5 1.0
CA C:SER64 4.8 59.1 1.0
CG C:PRO59 4.9 30.0 1.0

Iron binding site 10 out of 12 in 6igz

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Iron binding site 10 out of 12 in the Structure of Psi-Lhci


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Psi-Lhci within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:65.5
occ:1.00
FE2 C:SF4102 0.0 65.5 1.0
S1 C:SF4102 2.2 84.5 1.0
S3 C:SF4102 2.2 57.5 1.0
S4 C:SF4102 2.2 53.5 1.0
SG C:CYS17 2.8 30.0 1.0
CB C:CYS17 3.0 30.0 1.0
FE1 C:SF4102 3.1 62.6 1.0
FE4 C:SF4102 3.1 69.8 1.0
FE3 C:SF4102 3.1 72.5 1.0
N C:CYS17 3.5 60.0 1.0
S2 C:SF4102 3.8 51.2 1.0
CA C:CYS17 3.9 60.9 1.0
CB C:ALA40 4.4 30.0 1.0
N C:GLN16 4.4 67.1 1.0
N C:THR15 4.5 68.0 1.0
C C:THR15 4.7 69.1 1.0
C C:GLN16 4.7 60.5 1.0
CA C:THR15 4.8 68.5 1.0
N C:VAL18 4.8 62.0 1.0
C C:CYS17 4.9 60.5 1.0
SG C:CYS58 4.9 30.0 1.0
N C:CYS14 5.0 66.7 1.0
CG1 C:VAL65 5.0 30.0 1.0

Reference:

X.Qin, X.Pi, W.Wang, G.Han, L.Zhu, M.Liu, L.Cheng, J.R.Shen, T.Kuang, S.F.Sui. Structure of A Green Algal Photosystem I in Complex with A Large Number of Light-Harvesting Complex I Subunits. Nat Plants V. 5 263 2019.
ISSN: ESSN 2055-0278
PubMed: 30850820
DOI: 10.1038/S41477-019-0379-Y
Page generated: Sun Dec 13 16:34:22 2020

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