Iron in PDB 6ijj: Photosystem I of Chlamydomonas Reinhardtii

The structure of Photosystem I of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Magnesium

(Mg)

216 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosystem I of Chlamydomonas Reinhardtii (pdb code 6ijj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosystem I of Chlamydomonas Reinhardtii, PDB code: 6ijj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:32.6 occ:1.00 FE1 A:SF4853 0.0 32.6 1.0 S3 A:SF4853 2.0 32.6 1.0 S4 A:SF4853 2.1 32.6 1.0 S2 A:SF4853 2.1 32.6 1.0 FE4 A:SF4853 2.9 32.6 1.0 FE3 A:SF4853 2.9 32.6 1.0 FE2 A:SF4853 2.9 32.6 1.0 SG B:CYS560 3.0 27.6 1.0 CB B:CYS560 3.2 27.6 1.0 S1 A:SF4853 3.6 32.6 1.0 CD1 B:ILE703 4.0 25.5 1.0 N A:PRO578 4.4 25.0 1.0 CB A:PRO578 4.4 25.0 1.0 CA A:PRO578 4.5 25.0 1.0 CA B:CYS560 4.6 27.6 1.0 C A:GLY577 4.6 24.6 1.0 CB B:PRO559 4.7 23.3 1.0 CD A:PRO578 4.7 25.0 1.0 SG A:CYS584 4.8 24.0 1.0 N B:CYS560 4.8 27.6 1.0 O A:GLY577 4.9 24.6 1.0 C B:PRO559 4.9 23.3 1.0 N B:GLY562 4.9 25.0 1.0

Iron binding site 2 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:32.6 occ:1.00 FE2 A:SF4853 0.0 32.6 1.0 S1 A:SF4853 2.0 32.6 1.0 S4 A:SF4853 2.1 32.6 1.0 S3 A:SF4853 2.1 32.6 1.0 FE4 A:SF4853 2.9 32.6 1.0 FE1 A:SF4853 2.9 32.6 1.0 FE3 A:SF4853 2.9 32.6 1.0 SG A:CYS584 3.0 24.0 1.0 CB A:CYS584 3.4 24.0 1.0 S2 A:SF4853 3.6 32.6 1.0 CA A:CYS584 3.8 24.0 1.0 CE3 B:TRP668 4.1 22.5 1.0 SG B:CYS569 4.2 24.7 1.0 CZ3 B:TRP668 4.3 22.5 1.0 NH2 A:ARG724 4.3 22.4 1.0 N A:CYS584 4.5 24.0 1.0 CB A:CYS575 4.7 24.5 1.0 CD1 B:ILE703 4.7 25.5 1.0

Iron binding site 3 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:32.6 occ:1.00 FE3 A:SF4853 0.0 32.6 1.0 S2 A:SF4853 2.0 32.6 1.0 S1 A:SF4853 2.1 32.6 1.0 S4 A:SF4853 2.1 32.6 1.0 FE4 A:SF4853 2.9 32.6 1.0 FE1 A:SF4853 2.9 32.6 1.0 FE2 A:SF4853 2.9 32.6 1.0 SG B:CYS569 3.0 24.7 1.0 S3 A:SF4853 3.6 32.6 1.0 N B:CYS569 3.7 24.7 1.0 CA B:CYS569 3.7 24.7 1.0 CB B:CYS569 3.8 24.7 1.0 C B:THR568 4.3 23.1 1.0 CB B:CYS560 4.3 27.6 1.0 O B:GLY562 4.4 25.0 1.0 N B:THR568 4.6 23.1 1.0 O B:THR568 4.6 23.1 1.0 CD1 A:ILE720 4.8 22.9 1.0 C B:GLY562 4.8 25.0 1.0 SG B:CYS560 4.9 27.6 1.0 SG A:CYS575 4.9 24.5 1.0

Iron binding site 4 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:32.6 occ:1.00 FE4 A:SF4853 0.0 32.6 1.0 S3 A:SF4853 2.0 32.6 1.0 S2 A:SF4853 2.0 32.6 1.0 S1 A:SF4853 2.1 32.6 1.0 FE1 A:SF4853 2.9 32.6 1.0 FE3 A:SF4853 2.9 32.6 1.0 FE2 A:SF4853 2.9 32.6 1.0 SG A:CYS575 2.9 24.5 1.0 CB A:CYS575 3.1 24.5 1.0 S4 A:SF4853 3.6 32.6 1.0 CA A:GLY577 3.9 24.6 1.0 C A:GLY577 4.0 24.6 1.0 N A:GLY577 4.0 24.6 1.0 O A:GLY577 4.1 24.6 1.0 N A:PRO578 4.5 25.0 1.0 CA A:CYS575 4.6 24.5 1.0 C B:GLY562 4.7 25.0 1.0 N B:PRO563 4.7 25.9 1.0 CD B:PRO563 4.8 25.9 1.0 CA B:GLY562 4.9 25.0 1.0 CA A:CYS584 4.9 24.0 1.0 O B:GLY562 5.0 25.0 1.0 SG B:CYS560 5.0 27.6 1.0

Iron binding site 5 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:43.1 occ:1.00 FE1 C:SF4101 0.0 43.1 1.0 S3 C:SF4101 2.1 43.1 1.0 S2 C:SF4101 2.1 43.1 1.0 S4 C:SF4101 2.1 43.1 1.0 FE3 C:SF4101 2.9 43.1 1.0 FE2 C:SF4101 3.0 43.1 1.0 FE4 C:SF4101 3.0 43.1 1.0 SG C:CYS54 3.1 32.7 1.0 CB C:CYS54 3.4 32.7 1.0 CG2 C:VAL67 3.5 31.0 1.0 S1 C:SF4101 3.6 43.1 1.0 N C:LYS52 3.7 29.9 1.0 N C:CYS54 3.7 32.7 1.0 CA C:LYS52 3.8 29.9 1.0 N C:ARG53 4.1 29.6 1.0 CA C:CYS54 4.2 32.7 1.0 C C:LYS52 4.2 29.9 1.0 CB C:VAL67 4.8 31.0 1.0 N C:CYS51 4.8 29.9 1.0 C C:ARG53 4.8 29.6 1.0 C C:CYS51 4.8 29.9 1.0 SG C:CYS51 4.9 29.9 1.0 CA C:ARG53 5.0 29.6 1.0

Iron binding site 6 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:43.1 occ:1.00 FE2 C:SF4101 0.0 43.1 1.0 S1 C:SF4101 2.1 43.1 1.0 S3 C:SF4101 2.1 43.1 1.0 S4 C:SF4101 2.1 43.1 1.0 FE3 C:SF4101 2.9 43.1 1.0 FE4 C:SF4101 2.9 43.1 1.0 FE1 C:SF4101 3.0 43.1 1.0 SG C:CYS51 3.0 29.9 1.0 S2 C:SF4101 3.6 43.1 1.0 N C:CYS51 3.7 29.9 1.0 CD C:PRO22 3.8 34.5 1.0 N C:LYS52 4.1 29.9 1.0 CB C:CYS51 4.2 29.9 1.0 CG C:PRO22 4.2 34.5 1.0 N C:GLY50 4.3 32.1 1.0 CA C:CYS51 4.4 29.9 1.0 CG2 C:VAL49 4.4 33.1 1.0 CD1 C:LEU23 4.5 35.5 1.0 C C:CYS51 4.6 29.9 1.0 C C:GLY50 4.6 32.1 1.0 N C:ARG53 4.8 29.6 1.0 N C:VAL49 4.8 33.1 1.0 CA C:GLY50 4.8 32.1 1.0 SG C:CYS48 4.8 36.6 1.0 N C:PRO22 4.9 34.5 1.0

Iron binding site 7 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:43.1 occ:1.00 FE3 C:SF4101 0.0 43.1 1.0 S4 C:SF4101 2.1 43.1 1.0 S2 C:SF4101 2.1 43.1 1.0 S1 C:SF4101 2.1 43.1 1.0 FE1 C:SF4101 2.9 43.1 1.0 FE2 C:SF4101 2.9 43.1 1.0 FE4 C:SF4101 2.9 43.1 1.0 SG C:CYS21 3.0 35.3 1.0 CB C:CYS21 3.3 35.3 1.0 CA C:CYS21 3.6 35.3 1.0 S3 C:SF4101 3.6 43.1 1.0 CD1 C:LEU26 3.9 38.7 1.0 CD C:PRO22 4.1 34.5 1.0 CB C:CYS54 4.1 32.7 1.0 CG C:LEU26 4.3 38.7 1.0 C C:CYS21 4.5 35.3 1.0 CB C:VAL25 4.5 38.9 1.0 N C:PRO22 4.6 34.5 1.0 N C:CYS21 4.6 35.3 1.0 N C:CYS54 4.7 32.7 1.0 CG2 C:VAL25 4.8 38.9 1.0 SG C:CYS54 4.9 32.7 1.0 O C:CYS17 4.9 38.9 1.0 CA C:CYS54 4.9 32.7 1.0

Iron binding site 8 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:43.1 occ:1.00 FE4 C:SF4101 0.0 43.1 1.0 S1 C:SF4101 2.1 43.1 1.0 S2 C:SF4101 2.1 43.1 1.0 S3 C:SF4101 2.1 43.1 1.0 FE3 C:SF4101 2.9 43.1 1.0 FE2 C:SF4101 2.9 43.1 1.0 FE1 C:SF4101 3.0 43.1 1.0 SG C:CYS48 3.0 36.6 1.0 CB C:CYS48 3.6 36.6 1.0 S4 C:SF4101 3.6 43.1 1.0 CG2 C:VAL25 4.0 38.9 1.0 CB C:VAL25 4.0 38.9 1.0 CG2 C:VAL5 4.1 34.9 1.0 CA C:CYS48 4.1 36.6 1.0 CG1 C:VAL25 4.2 38.9 1.0 N C:GLY50 4.6 32.1 1.0 CG2 C:VAL67 4.7 31.0 1.0 N C:VAL49 4.7 33.1 1.0 C C:CYS48 4.9 36.6 1.0

Iron binding site 9 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.5 occ:1.00 FE1 C:SF4102 0.0 48.5 1.0 S2 C:SF4102 2.1 48.5 1.0 S3 C:SF4102 2.1 48.5 1.0 S4 C:SF4102 2.1 48.5 1.0 FE2 C:SF4102 2.9 48.5 1.0 FE4 C:SF4102 2.9 48.5 1.0 FE3 C:SF4102 3.0 48.5 1.0 SG C:CYS58 3.1 37.3 1.0 CD C:PRO59 3.2 36.8 1.0 CA C:CYS58 3.2 37.3 1.0 CB C:CYS58 3.3 37.3 1.0 S1 C:SF4102 3.6 48.5 1.0 N C:PRO59 3.8 36.8 1.0 C C:CYS58 3.9 37.3 1.0 SG C:CYS14 4.2 43.3 1.0 N C:CYS58 4.3 37.3 1.0 CG C:PRO59 4.5 36.8 1.0 O C:ALA57 4.7 34.8 1.0 CG2 C:THR60 4.7 40.0 1.0 CB C:SER64 4.8 38.3 1.0 N C:THR60 4.9 40.0 1.0 C C:ALA57 4.9 34.8 1.0 OG1 C:THR60 5.0 40.0 1.0

Iron binding site 10 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.5 occ:1.00 FE2 C:SF4102 0.0 48.5 1.0 S1 C:SF4102 2.1 48.5 1.0 S3 C:SF4102 2.1 48.5 1.0 S4 C:SF4102 2.1 48.5 1.0 FE1 C:SF4102 2.9 48.5 1.0 FE4 C:SF4102 2.9 48.5 1.0 FE3 C:SF4102 2.9 48.5 1.0 SG C:CYS17 3.0 38.9 1.0 CB C:CYS17 3.1 38.9 1.0 S2 C:SF4102 3.6 48.5 1.0 N C:CYS17 3.6 38.9 1.0 CG1 C:VAL65 3.9 35.2 1.0 CA C:CYS17 4.0 38.9 1.0 N C:GLN16 4.5 40.2 1.0 CB C:ALA40 4.6 46.1 1.0 C C:GLN16 4.8 40.2 1.0 CG2 C:VAL65 4.8 35.2 1.0 CB C:CYS58 4.9 37.3 1.0 CB C:VAL65 5.0 35.2 1.0

X.Su, J.Ma, X.Pan, X.Zhao, W.Chang, Z.Liu, X.Zhang, M.Li. Antenna Arrangement and Energy Transfer Pathways of A Green Algal Photosystem-I-Lhci Supercomplex. Nat Plants V. 5 273 2019.
ISSN: ESSN 2055-0278
PubMed: 30850819
DOI: 10.1038/S41477-019-0380-5