Iron in PDB 6ijo: Photosystem I of Chlamydomonas Reinhardtii

The structure of Photosystem I of Chlamydomonas Reinhardtii also contains other interesting chemical elements:

Magnesium

(Mg)

243 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Photosystem I of Chlamydomonas Reinhardtii (pdb code 6ijo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Photosystem I of Chlamydomonas Reinhardtii, PDB code: 6ijo:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:30.3 occ:1.00 FE1 A:SF4853 0.0 30.3 1.0 S3 A:SF4853 2.0 30.3 1.0 S4 A:SF4853 2.0 30.3 1.0 S2 A:SF4853 2.1 30.3 1.0 FE4 A:SF4853 2.8 30.3 1.0 FE2 A:SF4853 2.9 30.3 1.0 FE3 A:SF4853 2.9 30.3 1.0 SG B:CYS560 3.0 22.8 1.0 CB B:CYS560 3.1 22.8 1.0 S1 A:SF4853 3.5 30.3 1.0 CD1 B:ILE703 4.0 19.9 1.0 N A:PRO578 4.3 23.2 1.0 CB A:PRO578 4.3 23.2 1.0 CA A:PRO578 4.4 23.2 1.0 CA B:CYS560 4.5 22.8 1.0 CD A:PRO578 4.6 23.2 1.0 C A:GLY577 4.6 19.6 1.0 N B:CYS560 4.8 22.8 1.0 C B:PRO559 4.9 22.9 1.0 SG A:CYS584 4.9 19.2 1.0 CG A:PRO578 4.9 23.2 1.0 O B:PRO559 5.0 22.9 1.0 CB B:PRO559 5.0 22.9 1.0 N B:GLY562 5.0 22.1 1.0 O A:GLY577 5.0 19.6 1.0

Iron binding site 2 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:30.3 occ:1.00 FE2 A:SF4853 0.0 30.3 1.0 S1 A:SF4853 2.0 30.3 1.0 S4 A:SF4853 2.0 30.3 1.0 S3 A:SF4853 2.1 30.3 1.0 FE3 A:SF4853 2.8 30.3 1.0 FE1 A:SF4853 2.9 30.3 1.0 FE4 A:SF4853 2.9 30.3 1.0 SG A:CYS584 3.1 19.2 1.0 S2 A:SF4853 3.5 30.3 1.0 CB A:CYS584 3.6 19.2 1.0 SG B:CYS569 4.0 21.6 1.0 CA A:CYS584 4.1 19.2 1.0 CE3 B:TRP668 4.2 18.3 1.0 CZ3 B:TRP668 4.3 18.3 1.0 N A:CYS584 4.6 19.2 1.0 CD1 B:ILE703 4.7 19.9 1.0 NH2 A:ARG724 4.7 18.9 1.0 CB A:CYS575 4.9 19.3 1.0

Iron binding site 3 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:30.3 occ:1.00 FE3 A:SF4853 0.0 30.3 1.0 S2 A:SF4853 2.0 30.3 1.0 S1 A:SF4853 2.1 30.3 1.0 S4 A:SF4853 2.1 30.3 1.0 FE2 A:SF4853 2.8 30.3 1.0 FE4 A:SF4853 2.9 30.3 1.0 FE1 A:SF4853 2.9 30.3 1.0 SG B:CYS569 3.0 21.6 1.0 S3 A:SF4853 3.5 30.3 1.0 N B:CYS569 3.7 21.6 1.0 CA B:CYS569 3.8 21.6 1.0 CB B:CYS569 3.9 21.6 1.0 C B:THR568 4.2 22.7 1.0 CB B:CYS560 4.4 22.8 1.0 O B:GLY562 4.4 22.1 1.0 O B:THR568 4.5 22.7 1.0 N B:THR568 4.6 22.7 1.0 CD1 A:ILE720 4.6 20.6 1.0 SG A:CYS575 4.7 19.3 1.0 SG B:CYS560 4.8 22.8 1.0 C B:GLY562 4.9 22.1 1.0 CG2 A:ILE720 5.0 20.6 1.0

Iron binding site 4 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe853 b:30.3 occ:1.00 FE4 A:SF4853 0.0 30.3 1.0 S3 A:SF4853 2.0 30.3 1.0 S2 A:SF4853 2.0 30.3 1.0 S1 A:SF4853 2.0 30.3 1.0 FE1 A:SF4853 2.8 30.3 1.0 FE2 A:SF4853 2.9 30.3 1.0 FE3 A:SF4853 2.9 30.3 1.0 SG A:CYS575 3.0 19.3 1.0 CB A:CYS575 3.1 19.3 1.0 S4 A:SF4853 3.5 30.3 1.0 CA A:GLY577 3.8 19.6 1.0 C A:GLY577 3.9 19.6 1.0 N A:GLY577 3.9 19.6 1.0 O A:GLY577 4.1 19.6 1.0 N A:PRO578 4.4 23.2 1.0 CA A:CYS575 4.6 19.3 1.0 CA A:CYS584 4.8 19.2 1.0 N A:CYS584 4.8 19.2 1.0 N B:PRO563 4.9 22.2 1.0 CD B:PRO563 4.9 22.2 1.0 O A:THR583 4.9 19.3 1.0 SG A:CYS584 5.0 19.2 1.0 C A:THR583 5.0 19.3 1.0

Iron binding site 5 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:35.9 occ:1.00 FE1 C:SF4101 0.0 35.9 1.0 S3 C:SF4101 2.0 35.9 1.0 S4 C:SF4101 2.0 35.9 1.0 S2 C:SF4101 2.1 35.9 1.0 FE3 C:SF4101 2.9 35.9 1.0 FE2 C:SF4101 2.9 35.9 1.0 FE4 C:SF4101 2.9 35.9 1.0 SG C:CYS54 3.0 27.0 1.0 CB C:CYS54 3.1 27.0 1.0 S1 C:SF4101 3.6 35.9 1.0 N C:CYS54 3.6 27.0 1.0 CG2 C:VAL67 3.9 31.9 1.0 CA C:CYS54 4.0 27.0 1.0 N C:LYS52 4.1 27.1 1.0 CA C:LYS52 4.2 27.1 1.0 N C:ARG53 4.2 25.4 1.0 C C:LYS52 4.5 27.1 1.0 C C:ARG53 4.7 25.4 1.0 CD1 C:LEU26 4.7 34.5 1.0

Iron binding site 6 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:35.9 occ:1.00 FE2 C:SF4101 0.0 35.9 1.0 S3 C:SF4101 2.0 35.9 1.0 S1 C:SF4101 2.1 35.9 1.0 S4 C:SF4101 2.1 35.9 1.0 FE3 C:SF4101 2.9 35.9 1.0 N C:CYS51 2.9 26.9 1.0 FE1 C:SF4101 2.9 35.9 1.0 FE4 C:SF4101 2.9 35.9 1.0 SG C:CYS51 3.1 26.9 1.0 N C:LYS52 3.2 27.1 1.0 S2 C:SF4101 3.6 35.9 1.0 CA C:CYS51 3.6 26.9 1.0 C C:GLY50 3.7 29.5 1.0 N C:GLY50 3.7 29.5 1.0 C C:CYS51 3.7 26.9 1.0 CB C:CYS51 3.8 26.9 1.0 CA C:GLY50 3.8 29.5 1.0 CA C:LYS52 4.2 27.1 1.0 N C:ARG53 4.2 25.4 1.0 CG2 C:VAL49 4.4 30.5 1.0 SG C:CYS48 4.5 35.0 1.0 O C:GLY50 4.7 29.5 1.0 CD C:PRO22 4.7 29.4 1.0 C C:LYS52 4.7 27.1 1.0 O C:CYS51 4.8 26.9 1.0 C C:VAL49 4.8 30.5 1.0 N C:VAL49 4.8 30.5 1.0

Iron binding site 7 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:35.9 occ:1.00 FE3 C:SF4101 0.0 35.9 1.0 S4 C:SF4101 2.0 35.9 1.0 S2 C:SF4101 2.1 35.9 1.0 S1 C:SF4101 2.1 35.9 1.0 FE2 C:SF4101 2.9 35.9 1.0 FE1 C:SF4101 2.9 35.9 1.0 FE4 C:SF4101 2.9 35.9 1.0 SG C:CYS21 3.0 29.6 1.0 CA C:CYS21 3.2 29.6 1.0 CB C:CYS21 3.2 29.6 1.0 CD C:PRO22 3.3 29.4 1.0 S3 C:SF4101 3.6 35.9 1.0 N C:PRO22 3.9 29.4 1.0 C C:CYS21 3.9 29.6 1.0 CG2 C:VAL25 4.4 34.6 1.0 N C:CYS21 4.4 29.6 1.0 CG C:PRO22 4.5 29.4 1.0 SG C:CYS51 4.5 26.9 1.0 N C:CYS54 4.7 27.0 1.0 N C:LEU23 4.7 32.2 1.0 CB C:VAL25 4.7 34.6 1.0 CB C:CYS54 4.8 27.0 1.0 O C:CYS21 5.0 29.6 1.0

Iron binding site 8 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:35.9 occ:1.00 FE4 C:SF4101 0.0 35.9 1.0 S1 C:SF4101 2.1 35.9 1.0 S2 C:SF4101 2.1 35.9 1.0 S3 C:SF4101 2.1 35.9 1.0 FE3 C:SF4101 2.9 35.9 1.0 FE2 C:SF4101 2.9 35.9 1.0 FE1 C:SF4101 2.9 35.9 1.0 SG C:CYS48 3.1 35.0 1.0 CG2 C:VAL25 3.3 34.6 1.0 S4 C:SF4101 3.6 35.9 1.0 CB C:CYS48 3.6 35.0 1.0 CB C:VAL25 3.7 34.6 1.0 CG1 C:VAL25 3.9 34.6 1.0 CA C:CYS48 4.2 35.0 1.0 N C:GLY50 4.5 29.5 1.0 CG2 C:VAL5 4.6 35.5 1.0 SG C:CYS21 4.7 29.6 1.0 N C:VAL49 4.7 30.5 1.0 C C:CYS48 4.9 35.0 1.0 CA C:GLY50 4.9 29.5 1.0

Iron binding site 9 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.8 occ:1.00 FE1 C:SF4102 0.0 48.8 1.0 S3 C:SF4102 2.1 48.8 1.0 S2 C:SF4102 2.1 48.8 1.0 S4 C:SF4102 2.1 48.8 1.0 FE2 C:SF4102 2.9 48.8 1.0 FE4 C:SF4102 2.9 48.8 1.0 FE3 C:SF4102 2.9 48.8 1.0 SG C:CYS58 3.2 32.3 1.0 CD C:PRO59 3.2 32.7 1.0 CB C:CYS58 3.3 32.3 1.0 CA C:CYS58 3.3 32.3 1.0 S1 C:SF4102 3.6 48.8 1.0 SG C:CYS14 3.9 37.0 1.0 N C:PRO59 4.0 32.7 1.0 C C:CYS58 4.1 32.3 1.0 N C:CYS58 4.5 32.3 1.0 CG C:PRO59 4.5 32.7 1.0 O C:ALA57 4.9 28.1 1.0 CG2 C:THR60 4.9 36.0 1.0 CB C:SER64 4.9 37.2 1.0 OG1 C:THR60 4.9 36.0 1.0

Iron binding site 10 out of 12 in the Photosystem I of Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Photosystem I of Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.8 occ:1.00 FE2 C:SF4102 0.0 48.8 1.0 S3 C:SF4102 2.0 48.8 1.0 S1 C:SF4102 2.0 48.8 1.0 S4 C:SF4102 2.1 48.8 1.0 FE4 C:SF4102 2.9 48.8 1.0 FE1 C:SF4102 2.9 48.8 1.0 FE3 C:SF4102 2.9 48.8 1.0 SG C:CYS17 3.0 33.1 1.0 CB C:CYS17 3.1 33.1 1.0 CG1 C:VAL65 3.4 34.7 1.0 S2 C:SF4102 3.5 48.8 1.0 N C:CYS17 4.1 33.1 1.0 CA C:CYS17 4.2 33.1 1.0 CG2 C:VAL65 4.5 34.7 1.0 CB C:VAL65 4.6 34.7 1.0 CB C:ALA40 4.6 45.4 1.0 CB C:CYS58 4.8 32.3 1.0

X.Su, J.Ma, X.Pan, X.Zhao, W.Chang, Z.Liu, X.Zhang, M.Li. Antenna Arrangement and Energy Transfer Pathways of A Green Algal Photosystem-I-Lhci Supercomplex. Nat Plants V. 5 273 2019.
ISSN: ESSN 2055-0278
PubMed: 30850819
DOI: 10.1038/S41477-019-0380-5