Iron in PDB 6ivy: Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa
Protein crystallography data
The structure of Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa, PDB code: 6ivy
was solved by
Z.R.Zhang,
H.Y.Li,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.07 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.577,
104.600,
58.758,
90.00,
110.19,
90.00
|
R / Rfree (%)
|
17.5 /
22.1
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa
(pdb code 6ivy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa, PDB code: 6ivy:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 6ivy
Go back to
Iron Binding Sites List in 6ivy
Iron binding site 1 out
of 2 in the Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe402
b:10.0
occ:1.00
|
OH
|
A:TYR223
|
1.8
|
5.8
|
1.0
|
O2
|
A:PO4401
|
1.9
|
10.8
|
1.0
|
OH
|
A:TYR224
|
1.9
|
10.0
|
1.0
|
OE1
|
A:GLU87
|
2.1
|
11.1
|
1.0
|
O
|
A:HOH523
|
2.2
|
7.6
|
1.0
|
NE2
|
A:HIS39
|
2.2
|
10.8
|
1.0
|
CZ
|
A:TYR224
|
3.0
|
9.5
|
1.0
|
CZ
|
A:TYR223
|
3.1
|
7.6
|
1.0
|
CE1
|
A:HIS39
|
3.1
|
9.5
|
1.0
|
CD
|
A:GLU87
|
3.1
|
8.0
|
1.0
|
CD2
|
A:HIS39
|
3.3
|
8.2
|
1.0
|
P
|
A:PO4401
|
3.3
|
9.5
|
1.0
|
OE2
|
A:GLU87
|
3.5
|
7.7
|
1.0
|
CE2
|
A:TYR224
|
3.5
|
6.3
|
1.0
|
CE1
|
A:TYR223
|
3.6
|
7.5
|
1.0
|
O3
|
A:PO4401
|
3.8
|
6.1
|
1.0
|
CE1
|
A:TYR224
|
4.0
|
9.8
|
1.0
|
NH1
|
A:ARG129
|
4.0
|
8.5
|
1.0
|
O1
|
A:PO4401
|
4.1
|
11.4
|
1.0
|
ND2
|
A:ASN221
|
4.1
|
7.6
|
1.0
|
O
|
A:HOH518
|
4.1
|
9.9
|
1.0
|
ND2
|
A:ASN203
|
4.2
|
7.1
|
1.0
|
NH2
|
A:ARG129
|
4.2
|
7.0
|
1.0
|
CE2
|
A:TYR223
|
4.2
|
5.9
|
1.0
|
ND1
|
A:HIS39
|
4.2
|
10.9
|
1.0
|
O4
|
A:PO4401
|
4.4
|
8.7
|
1.0
|
CG
|
A:HIS39
|
4.4
|
11.1
|
1.0
|
CG
|
A:GLU87
|
4.5
|
8.4
|
1.0
|
CZ
|
A:ARG129
|
4.6
|
6.9
|
1.0
|
CD2
|
A:TYR224
|
4.8
|
7.1
|
1.0
|
CB
|
A:GLU87
|
5.0
|
7.2
|
1.0
|
O
|
A:HOH543
|
5.0
|
12.7
|
1.0
|
CD1
|
A:TYR223
|
5.0
|
10.4
|
1.0
|
|
Iron binding site 2 out
of 2 in 6ivy
Go back to
Iron Binding Sites List in 6ivy
Iron binding site 2 out
of 2 in the Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Iron-Bound Hita From Pseudomonas Aeruginosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe402
b:7.9
occ:1.00
|
OH
|
B:TYR223
|
1.9
|
9.2
|
1.0
|
OH
|
B:TYR224
|
1.9
|
6.8
|
1.0
|
O3
|
B:PO4401
|
2.0
|
7.2
|
1.0
|
OE2
|
B:GLU87
|
2.1
|
7.3
|
1.0
|
O
|
B:HOH504
|
2.2
|
4.8
|
1.0
|
NE2
|
B:HIS39
|
2.3
|
10.8
|
1.0
|
CZ
|
B:TYR224
|
3.0
|
6.5
|
1.0
|
CE1
|
B:HIS39
|
3.0
|
10.1
|
1.0
|
CD
|
B:GLU87
|
3.0
|
7.3
|
1.0
|
CZ
|
B:TYR223
|
3.2
|
6.9
|
1.0
|
OE1
|
B:GLU87
|
3.3
|
6.9
|
1.0
|
P
|
B:PO4401
|
3.3
|
11.8
|
1.0
|
CD2
|
B:HIS39
|
3.4
|
8.3
|
1.0
|
O2
|
B:PO4401
|
3.6
|
10.5
|
1.0
|
CE2
|
B:TYR224
|
3.6
|
6.2
|
1.0
|
CE1
|
B:TYR223
|
3.7
|
8.0
|
1.0
|
CE1
|
B:TYR224
|
4.0
|
8.4
|
1.0
|
O4
|
B:PO4401
|
4.0
|
9.1
|
1.0
|
NH1
|
B:ARG129
|
4.1
|
8.0
|
1.0
|
OD1
|
B:ASN203
|
4.1
|
13.9
|
1.0
|
ND2
|
B:ASN221
|
4.1
|
6.7
|
1.0
|
O
|
B:HOH585
|
4.2
|
9.8
|
1.0
|
ND1
|
B:HIS39
|
4.2
|
9.4
|
1.0
|
CE2
|
B:TYR223
|
4.3
|
7.2
|
1.0
|
NH2
|
B:ARG129
|
4.4
|
7.2
|
1.0
|
CG
|
B:HIS39
|
4.4
|
12.4
|
1.0
|
CG
|
B:GLU87
|
4.4
|
6.8
|
1.0
|
O1
|
B:PO4401
|
4.4
|
6.1
|
1.0
|
CZ
|
B:ARG129
|
4.7
|
8.3
|
1.0
|
CB
|
B:GLU87
|
4.9
|
6.6
|
1.0
|
CD2
|
B:TYR224
|
4.9
|
9.6
|
1.0
|
|
Reference:
Y.Guo,
H.Y.Li,
H.Z.Sun.
Ferric Iron Binding Protein Hita To Be Published.
Page generated: Sun Dec 13 16:34:36 2020
|