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Iron in PDB 6j87: Crystal Structure of Hind with Nmft and No

Protein crystallography data

The structure of Crystal Structure of Hind with Nmft and No, PDB code: 6j87 was solved by H.Fei, T.Mori, I.Abe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.47 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.212, 155.029, 56.556, 90.00, 115.54, 90.00
R / Rfree (%) 17.8 / 25.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Hind with Nmft and No (pdb code 6j87). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Hind with Nmft and No, PDB code: 6j87:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6j87

Go back to Iron Binding Sites List in 6j87
Iron binding site 1 out of 2 in the Crystal Structure of Hind with Nmft and No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Hind with Nmft and No within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:24.6
occ:1.00
FE A:HEM501 0.0 24.6 1.0
N A:NO502 1.9 19.4 1.0
NC A:HEM501 2.0 19.6 1.0
NB A:HEM501 2.1 22.0 1.0
ND A:HEM501 2.1 21.0 1.0
NA A:HEM501 2.2 18.6 1.0
SG A:CYS347 2.8 21.3 1.0
C4C A:HEM501 3.0 20.4 1.0
C1D A:HEM501 3.0 19.6 1.0
C1B A:HEM501 3.1 19.9 1.0
C4A A:HEM501 3.1 17.8 1.0
O A:NO502 3.1 23.9 1.0
C1C A:HEM501 3.1 22.3 1.0
C4B A:HEM501 3.1 19.1 1.0
C4D A:HEM501 3.2 22.1 1.0
C1A A:HEM501 3.3 19.2 1.0
CHD A:HEM501 3.3 19.5 1.0
CHB A:HEM501 3.4 19.1 1.0
CHC A:HEM501 3.5 22.4 1.0
CHA A:HEM501 3.7 19.6 1.0
CB A:CYS347 3.7 14.3 1.0
C3C A:HEM501 4.2 20.7 1.0
CA A:CYS347 4.2 17.8 1.0
C2D A:HEM501 4.3 21.7 1.0
C2B A:HEM501 4.3 21.2 1.0
C2C A:HEM501 4.3 21.5 1.0
C3B A:HEM501 4.3 19.8 1.0
C3A A:HEM501 4.4 19.7 1.0
C3D A:HEM501 4.4 18.2 1.0
C2A A:HEM501 4.4 16.0 1.0
CB A:ALA235 4.5 24.6 1.0
N A:LEU348 4.6 20.9 1.0
NAJ A:B9L503 4.8 32.0 0.9
C A:CYS347 4.8 21.3 1.0
CAD A:B9L503 4.9 24.6 0.9

Iron binding site 2 out of 2 in 6j87

Go back to Iron Binding Sites List in 6j87
Iron binding site 2 out of 2 in the Crystal Structure of Hind with Nmft and No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Hind with Nmft and No within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:27.6
occ:1.00
FE B:HEM501 0.0 27.6 1.0
N B:NO502 1.8 18.4 1.0
NA B:HEM501 2.1 23.2 1.0
ND B:HEM501 2.1 23.0 1.0
NB B:HEM501 2.1 22.5 1.0
NC B:HEM501 2.1 22.6 1.0
SG B:CYS347 2.9 21.2 1.0
O B:NO502 2.9 29.6 1.0
C1D B:HEM501 3.0 22.1 1.0
C4A B:HEM501 3.0 21.3 1.0
C1B B:HEM501 3.1 22.3 1.0
C4C B:HEM501 3.1 24.4 1.0
C1A B:HEM501 3.1 23.6 1.0
C4D B:HEM501 3.1 22.9 1.0
C4B B:HEM501 3.2 20.8 1.0
C1C B:HEM501 3.2 22.6 1.0
CHD B:HEM501 3.4 21.1 1.0
CHB B:HEM501 3.4 21.2 1.0
CHA B:HEM501 3.5 23.1 1.0
CHC B:HEM501 3.6 23.5 1.0
CB B:CYS347 3.9 18.8 1.0
C2D B:HEM501 4.3 23.7 1.0
C3A B:HEM501 4.3 23.4 1.0
C3D B:HEM501 4.3 19.5 1.0
C2A B:HEM501 4.3 20.1 1.0
C2B B:HEM501 4.3 24.6 1.0
C3B B:HEM501 4.3 21.2 1.0
C3C B:HEM501 4.3 23.2 1.0
C2C B:HEM501 4.4 23.2 1.0
CA B:CYS347 4.4 21.0 1.0
CB B:ALA235 4.4 22.8 1.0
N B:LEU348 4.7 23.2 1.0
CE2 B:B9L503 4.8 25.2 0.8
CZ B:B9L503 4.9 25.4 0.8
NAJ B:B9L503 4.9 28.7 0.8

Reference:

H.Fei, T.Mori, I.Morita, H.Nakamura, M.Alblova, S.Hoshino, T.Awakawa, I.Abe. Molecular Basis For the Intramolecular C(SP2)-H Amination Reaction By P450 Enzyme in the Biosynthesis of Indolactams To Be Published.
Page generated: Tue Aug 6 23:19:02 2024

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