Iron in PDB 6j94: Crystal Structure of CYP97A3
Protein crystallography data
The structure of Crystal Structure of CYP97A3, PDB code: 6j94
was solved by
G.Niu,
Q.Guo,
J.Wang,
S.Zhao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.96 /
2.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
164.006,
70.414,
133.168,
90.00,
124.62,
90.00
|
R / Rfree (%)
|
18.3 /
21.3
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of CYP97A3
(pdb code 6j94). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Crystal Structure of CYP97A3, PDB code: 6j94:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 6j94
Go back to
Iron Binding Sites List in 6j94
Iron binding site 1 out
of 2 in the Crystal Structure of CYP97A3
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of CYP97A3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:10.3
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
10.3
|
1.0
|
NB
|
A:HEM601
|
2.0
|
7.5
|
1.0
|
NC
|
A:HEM601
|
2.1
|
10.4
|
1.0
|
NA
|
A:HEM601
|
2.1
|
6.7
|
1.0
|
ND
|
A:HEM601
|
2.1
|
5.7
|
1.0
|
SG
|
A:CYS516
|
2.6
|
9.2
|
1.0
|
O
|
A:HOH827
|
2.7
|
11.7
|
1.0
|
C1B
|
A:HEM601
|
3.1
|
6.4
|
1.0
|
C4C
|
A:HEM601
|
3.1
|
8.4
|
1.0
|
C4B
|
A:HEM601
|
3.1
|
6.5
|
1.0
|
C1C
|
A:HEM601
|
3.1
|
7.6
|
1.0
|
C4A
|
A:HEM601
|
3.1
|
7.5
|
1.0
|
C1A
|
A:HEM601
|
3.1
|
6.2
|
1.0
|
C4D
|
A:HEM601
|
3.1
|
6.1
|
1.0
|
C1D
|
A:HEM601
|
3.1
|
7.5
|
1.0
|
CB
|
A:CYS516
|
3.3
|
9.3
|
1.0
|
CHB
|
A:HEM601
|
3.4
|
7.8
|
1.0
|
CHC
|
A:HEM601
|
3.4
|
7.1
|
1.0
|
CHD
|
A:HEM601
|
3.5
|
7.3
|
1.0
|
CHA
|
A:HEM601
|
3.5
|
6.1
|
1.0
|
CA
|
A:CYS516
|
3.9
|
6.8
|
1.0
|
O
|
A:ALA377
|
4.2
|
11.2
|
1.0
|
C2B
|
A:HEM601
|
4.3
|
7.2
|
1.0
|
C3C
|
A:HEM601
|
4.3
|
7.4
|
1.0
|
C2C
|
A:HEM601
|
4.3
|
8.3
|
1.0
|
C3B
|
A:HEM601
|
4.3
|
9.3
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
5.4
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
7.0
|
1.0
|
C3D
|
A:HEM601
|
4.3
|
6.0
|
1.0
|
C2D
|
A:HEM601
|
4.3
|
6.7
|
1.0
|
O
|
A:HOH890
|
4.5
|
10.4
|
1.0
|
CB
|
A:ALA377
|
4.6
|
8.1
|
1.0
|
N
|
A:ILE517
|
4.7
|
8.1
|
1.0
|
C
|
A:CYS516
|
4.8
|
7.3
|
1.0
|
N
|
A:GLY518
|
4.8
|
9.1
|
1.0
|
C
|
A:ALA377
|
4.9
|
10.8
|
1.0
|
N
|
A:CYS516
|
5.0
|
5.7
|
1.0
|
|
Iron binding site 2 out
of 2 in 6j94
Go back to
Iron Binding Sites List in 6j94
Iron binding site 2 out
of 2 in the Crystal Structure of CYP97A3
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of CYP97A3 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:6.0
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
6.0
|
1.0
|
NB
|
B:HEM601
|
2.0
|
3.5
|
1.0
|
NC
|
B:HEM601
|
2.1
|
6.4
|
1.0
|
NA
|
B:HEM601
|
2.1
|
4.1
|
1.0
|
ND
|
B:HEM601
|
2.1
|
5.2
|
1.0
|
SG
|
B:CYS516
|
2.5
|
5.6
|
1.0
|
O
|
B:HOH887
|
2.7
|
8.9
|
1.0
|
C4B
|
B:HEM601
|
3.1
|
4.2
|
1.0
|
C1C
|
B:HEM601
|
3.1
|
4.5
|
1.0
|
C1B
|
B:HEM601
|
3.1
|
3.6
|
1.0
|
C1A
|
B:HEM601
|
3.1
|
3.5
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
3.7
|
1.0
|
C4D
|
B:HEM601
|
3.1
|
4.5
|
1.0
|
C4C
|
B:HEM601
|
3.1
|
5.5
|
1.0
|
C1D
|
B:HEM601
|
3.1
|
4.9
|
1.0
|
CB
|
B:CYS516
|
3.3
|
4.8
|
1.0
|
CHC
|
B:HEM601
|
3.4
|
5.4
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
4.1
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
4.0
|
1.0
|
CHD
|
B:HEM601
|
3.5
|
5.1
|
1.0
|
CA
|
B:CYS516
|
3.9
|
5.2
|
1.0
|
C2C
|
B:HEM601
|
4.3
|
5.1
|
1.0
|
C2A
|
B:HEM601
|
4.3
|
4.1
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
4.5
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
3.4
|
1.0
|
C3A
|
B:HEM601
|
4.3
|
3.3
|
1.0
|
C3C
|
B:HEM601
|
4.3
|
5.8
|
1.0
|
C3D
|
B:HEM601
|
4.3
|
4.8
|
1.0
|
C2D
|
B:HEM601
|
4.3
|
6.0
|
1.0
|
O
|
B:ALA377
|
4.4
|
7.3
|
1.0
|
O
|
B:HOH882
|
4.5
|
5.4
|
1.0
|
CB
|
B:ALA377
|
4.5
|
6.9
|
1.0
|
N
|
B:ILE517
|
4.7
|
5.0
|
1.0
|
N
|
B:GLY518
|
4.7
|
6.8
|
1.0
|
C
|
B:CYS516
|
4.8
|
5.4
|
1.0
|
O
|
B:HOH1025
|
4.8
|
12.6
|
1.0
|
C
|
B:ALA377
|
5.0
|
7.3
|
1.0
|
|
Reference:
G.Niu,
Q.Guo,
J.Wang,
S.Zhao.
Crystal Structure of CYP97A3 To Be Published.
Page generated: Tue Aug 6 23:20:37 2024
|