Iron in PDB 6jbn: Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron

The structure of Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron, PDB code: 6jbn was solved by K.Okumura, R.Takase, B.Mikami, K.Murata, W.Hashimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.49 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	100.020, 104.990, 83.810, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 29.8

The binding sites of Iron atom in the Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron (pdb code 6jbn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron, PDB code: 6jbn:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:23.6 occ:1.00 FE A:HEM501 0.0 23.6 1.0 ND A:HEM501 1.9 26.1 1.0 NA A:HEM501 2.0 23.1 1.0 NC A:HEM501 2.1 24.4 1.0 NB A:HEM501 2.1 23.2 1.0 NE2 A:HIS343 2.3 23.3 1.0 O1 A:OXY502 2.6 26.4 1.0 C4D A:HEM501 2.9 21.5 1.0 C1D A:HEM501 2.9 21.5 1.0 C1A A:HEM501 3.0 19.4 1.0 C4A A:HEM501 3.1 22.5 1.0 C4C A:HEM501 3.1 19.1 1.0 C1B A:HEM501 3.1 19.1 1.0 C4B A:HEM501 3.1 23.3 1.0 C1C A:HEM501 3.2 22.4 1.0 CD2 A:HIS343 3.2 22.1 1.0 CHA A:HEM501 3.4 19.8 1.0 CHD A:HEM501 3.4 21.2 1.0 CE1 A:HIS343 3.4 23.9 1.0 CHB A:HEM501 3.5 20.8 1.0 CHC A:HEM501 3.5 20.4 1.0 O2 A:OXY502 3.8 27.2 1.0 NH2 A:ARG361 3.9 18.9 1.0 C3D A:HEM501 4.2 18.0 1.0 C2D A:HEM501 4.2 20.7 1.0 C2A A:HEM501 4.2 23.2 1.0 C3A A:HEM501 4.2 23.4 1.0 C3C A:HEM501 4.3 20.5 1.0 C2B A:HEM501 4.3 17.3 1.0 C2C A:HEM501 4.3 15.7 1.0 C3B A:HEM501 4.3 17.8 1.0 CG A:HIS343 4.4 22.0 1.0 ND1 A:HIS343 4.5 21.1 1.0 CD A:ARG361 4.5 16.4 1.0 CZ A:ARG361 4.6 21.6 1.0 NE A:ARG361 4.9 19.4 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Sphingomonas Sp. A1 Peroxidase Efeb Responsible For Import of Iron within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:22.8 occ:1.00 FE B:HEM501 0.0 22.8 1.0 ND B:HEM501 1.9 23.4 1.0 NA B:HEM501 2.0 22.1 1.0 NC B:HEM501 2.1 23.5 1.0 NB B:HEM501 2.1 26.1 1.0 NE2 B:HIS343 2.3 21.4 1.0 O2 B:OXY502 2.7 25.9 1.0 C4D B:HEM501 2.9 21.7 1.0 C1D B:HEM501 2.9 24.0 1.0 C1A B:HEM501 3.0 21.1 1.0 C4A B:HEM501 3.0 22.8 1.0 C4C B:HEM501 3.0 20.4 1.0 C1B B:HEM501 3.1 23.8 1.0 CD2 B:HIS343 3.1 20.5 1.0 C4B B:HEM501 3.1 24.9 1.0 C1C B:HEM501 3.2 20.6 1.0 CHA B:HEM501 3.4 20.9 1.0 CE1 B:HIS343 3.4 23.9 1.0 CHD B:HEM501 3.4 17.9 1.0 CHB B:HEM501 3.5 23.4 1.0 CHC B:HEM501 3.5 21.5 1.0 O1 B:OXY502 3.9 20.7 1.0 NH1 B:ARG361 3.9 18.0 1.0 C3D B:HEM501 4.2 21.0 1.0 C2D B:HEM501 4.2 27.6 1.0 C2A B:HEM501 4.2 28.1 1.0 C3A B:HEM501 4.2 26.4 1.0 C3C B:HEM501 4.3 22.9 1.0 CG B:HIS343 4.3 23.2 1.0 C2B B:HEM501 4.3 27.9 1.0 C2C B:HEM501 4.3 19.2 1.0 C3B B:HEM501 4.4 20.7 1.0 ND1 B:HIS343 4.4 23.9 1.0 CD B:ARG361 4.5 15.6 1.0 CZ B:ARG361 4.6 25.1 1.0 NE B:ARG361 4.9 22.8 1.0

K.Okumura, R.Takase, B.Mikami, K.Murata, W.Hashimoto. Rare Metal Binding By A Cell-Surface Component of Bacterial Efeuob Iron Importer To Be Published.