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Iron in PDB 6jlm: Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
All present enzymatic activity of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2):
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2), PDB code: 6jlm
was solved by
M.Suga,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.99 / 2.35 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 122.040, 228.840, 286.980, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 15.3 / 20.9 |
Other elements in 6jlm:
The structure of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) also contains other interesting chemical elements:
| Magnesium | (Mg) | 72 atoms |
| Manganese | (Mn) | 8 atoms |
| Calcium | (Ca) | 11 atoms |
| Chlorine | (Cl) | 6 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
(pdb code 6jlm). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2), PDB code: 6jlm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2), PDB code: 6jlm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 1 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Iron binding site 2 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 2 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Iron binding site 3 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 3 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Iron binding site 4 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 4 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Iron binding site 5 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 5 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Iron binding site 6 out of 6 in 6jlm
Go back to
Iron Binding Sites List in 6jlm
Iron binding site 6 out
of 6 in the Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Xfel Structure of Cyanobacterial Photosystem II (Dark State, DATASET2) within 5.0Å range:
|
Reference:
M.Suga,
F.Akita,
K.Yamashita,
Y.Nakajima,
G.Ueno,
H.Li,
T.Yamane,
K.Hirata,
Y.Umena,
S.Yonekura,
L.J.Yu,
H.Murakami,
T.Nomura,
T.Kimura,
M.Kubo,
S.Baba,
T.Kumasaka,
K.Tono,
M.Yabashi,
H.Isobe,
K.Yamaguchi,
M.Yamamoto,
H.Ago,
J.R.Shen.
An Oxyl/Oxo Mechanism For Oxygen-Oxygen Coupling in Psii Revealed By An X-Ray Free-Electron Laser. Science V. 366 334 2019.
ISSN: ESSN 1095-9203
PubMed: 31624207
DOI: 10.1126/SCIENCE.AAX6998
Page generated: Sun Dec 13 16:35:16 2020
ISSN: ESSN 1095-9203
PubMed: 31624207
DOI: 10.1126/SCIENCE.AAX6998
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