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Iron in PDB 6kac: Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii

Enzymatic activity of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii

All present enzymatic activity of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii:
1.10.3.9;

Other elements in 6kac:

The structure of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii also contains other interesting chemical elements:

Magnesium (Mg) 198 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii (pdb code 6kac). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii, PDB code: 6kac:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 6kac

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Iron binding site 1 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:30.6
occ:1.00
NE2 A:HIS215 2.2 21.4 1.0
NE2 D:HIS214 2.2 21.1 1.0
NE2 A:HIS272 2.3 20.8 1.0
NE2 D:HIS268 2.3 23.5 1.0
O3 D:BCT401 2.3 25.5 1.0
O2 D:BCT401 2.3 25.5 1.0
CE1 A:HIS215 2.6 21.4 1.0
C D:BCT401 2.7 25.5 1.0
CE1 D:HIS214 2.9 21.1 1.0
CE1 A:HIS272 3.1 20.8 1.0
CD2 D:HIS268 3.2 23.5 1.0
CE1 D:HIS268 3.3 23.5 1.0
CD2 A:HIS272 3.3 20.8 1.0
CD2 D:HIS214 3.5 21.1 1.0
CD2 A:HIS215 3.5 21.4 1.0
O1 D:BCT401 3.9 25.5 1.0
ND1 A:HIS215 3.9 21.4 1.0
ND1 D:HIS214 4.1 21.1 1.0
ND1 A:HIS272 4.3 20.8 1.0
OH A:TYR246 4.3 43.0 1.0
CG A:HIS215 4.3 21.4 1.0
CG D:HIS268 4.3 23.5 1.0
ND1 D:HIS268 4.4 23.5 1.0
CG D:HIS214 4.4 21.1 1.0
CG A:HIS272 4.4 20.8 1.0
CG2 A:VAL219 4.5 28.6 1.0
OH D:TYR244 4.7 25.4 1.0
CG2 D:VAL218 4.9 21.5 1.0

Iron binding site 2 out of 4 in 6kac

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Iron binding site 2 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:62.7
occ:1.00
FE F:HEM101 0.0 62.7 1.0
NA F:HEM101 2.0 62.7 1.0
NB F:HEM101 2.0 62.7 1.0
NC F:HEM101 2.0 62.7 1.0
NE2 E:HIS23 2.0 61.6 1.0
ND F:HEM101 2.0 62.7 1.0
NE2 F:HIS23 2.0 54.8 1.0
CE1 E:HIS23 2.7 61.6 1.0
C1A F:HEM101 3.0 62.7 1.0
CE1 F:HIS23 3.0 54.8 1.0
C4D F:HEM101 3.0 62.7 1.0
C4A F:HEM101 3.0 62.7 1.0
C1C F:HEM101 3.0 62.7 1.0
C4B F:HEM101 3.0 62.7 1.0
CD2 F:HIS23 3.1 54.8 1.0
C1B F:HEM101 3.1 62.7 1.0
C1D F:HEM101 3.1 62.7 1.0
C4C F:HEM101 3.1 62.7 1.0
CD2 E:HIS23 3.3 61.6 1.0
CHA F:HEM101 3.4 62.7 1.0
CHC F:HEM101 3.4 62.7 1.0
CHB F:HEM101 3.4 62.7 1.0
CHD F:HEM101 3.5 62.7 1.0
ND1 E:HIS23 3.9 61.6 1.0
ND1 F:HIS23 4.1 54.8 1.0
C2A F:HEM101 4.2 62.7 1.0
CG F:HIS23 4.2 54.8 1.0
C3A F:HEM101 4.2 62.7 1.0
C3D F:HEM101 4.2 62.7 1.0
CG E:HIS23 4.2 61.6 1.0
C2C F:HEM101 4.2 62.7 1.0
C2D F:HEM101 4.2 62.7 1.0
C3B F:HEM101 4.3 62.7 1.0
C3C F:HEM101 4.3 62.7 1.0
C2B F:HEM101 4.3 62.7 1.0
NE1 F:TRP19 4.5 61.6 1.0
CE1 E:TYR19 4.8 63.2 1.0

Iron binding site 3 out of 4 in 6kac

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Iron binding site 3 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe402

b:31.4
occ:1.00
NE2 a:HIS215 2.2 21.3 1.0
NE2 d:HIS214 2.2 21.6 1.0
NE2 a:HIS272 2.3 21.1 1.0
NE2 d:HIS268 2.3 23.5 1.0
O3 d:BCT401 2.3 25.5 1.0
O2 d:BCT401 2.3 25.5 1.0
CE1 a:HIS215 2.6 21.3 1.0
C d:BCT401 2.7 25.5 1.0
CE1 d:HIS214 2.9 21.6 1.0
CE1 a:HIS272 3.1 21.1 1.0
CD2 d:HIS268 3.2 23.5 1.0
CE1 d:HIS268 3.3 23.5 1.0
CD2 a:HIS272 3.3 21.1 1.0
CD2 d:HIS214 3.5 21.6 1.0
CD2 a:HIS215 3.5 21.3 1.0
O1 d:BCT401 3.9 25.5 1.0
ND1 a:HIS215 3.9 21.3 1.0
ND1 d:HIS214 4.1 21.6 1.0
ND1 a:HIS272 4.3 21.1 1.0
OH a:TYR246 4.3 43.5 1.0
CG a:HIS215 4.3 21.3 1.0
CG d:HIS268 4.3 23.5 1.0
ND1 d:HIS268 4.4 23.5 1.0
CG d:HIS214 4.4 21.6 1.0
CG a:HIS272 4.4 21.1 1.0
CG2 a:VAL219 4.5 28.6 1.0
OH d:TYR244 4.7 25.6 1.0
CG2 d:VAL218 4.9 22.1 1.0

Iron binding site 4 out of 4 in 6kac

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Iron binding site 4 out of 4 in the Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the C2S2-Type Psii-Lhcii Supercomplex From Chlamydomonas Reihardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe101

b:62.2
occ:1.00
FE f:HEM101 0.0 62.2 1.0
NA f:HEM101 2.0 62.2 1.0
NB f:HEM101 2.0 62.2 1.0
NC f:HEM101 2.0 62.2 1.0
NE2 e:HIS23 2.0 61.2 1.0
ND f:HEM101 2.0 62.2 1.0
NE2 f:HIS23 2.0 54.3 1.0
CE1 e:HIS23 2.7 61.2 1.0
C1A f:HEM101 3.0 62.2 1.0
CE1 f:HIS23 3.0 54.3 1.0
C4D f:HEM101 3.0 62.2 1.0
C4A f:HEM101 3.0 62.2 1.0
C1C f:HEM101 3.0 62.2 1.0
C4B f:HEM101 3.0 62.2 1.0
CD2 f:HIS23 3.1 54.3 1.0
C1B f:HEM101 3.1 62.2 1.0
C1D f:HEM101 3.1 62.2 1.0
C4C f:HEM101 3.1 62.2 1.0
CD2 e:HIS23 3.3 61.2 1.0
CHA f:HEM101 3.4 62.2 1.0
CHC f:HEM101 3.4 62.2 1.0
CHB f:HEM101 3.4 62.2 1.0
CHD f:HEM101 3.5 62.2 1.0
ND1 e:HIS23 3.9 61.2 1.0
ND1 f:HIS23 4.1 54.3 1.0
C2A f:HEM101 4.2 62.2 1.0
CG f:HIS23 4.2 54.3 1.0
C3A f:HEM101 4.2 62.2 1.0
C3D f:HEM101 4.2 62.2 1.0
CG e:HIS23 4.2 61.2 1.0
C2C f:HEM101 4.2 62.2 1.0
C2D f:HEM101 4.2 62.2 1.0
C3B f:HEM101 4.3 62.2 1.0
C3C f:HEM101 4.3 62.2 1.0
C2B f:HEM101 4.3 62.2 1.0
NE1 f:TRP19 4.5 60.8 1.0
CE1 e:TYR19 4.8 63.4 1.0

Reference:

X.Sheng, A.J.Li, D.F.Song, Z.F.Liu. Supramolecular Insights Intobasis of Light Harvesting For Photosystem II in Green Algae To Be Published.
Page generated: Sun Dec 13 16:36:32 2020

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