Atomistry » Iron » PDB 6jsu-6kbh » 6kao
Atomistry »
  Iron »
    PDB 6jsu-6kbh »
      6kao »

Iron in PDB 6kao: Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark

Protein crystallography data

The structure of Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark, PDB code: 6kao was solved by N.Shibayama, S.Y.Park, M.Ohki, A.Sato-Tomita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.90 / 1.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.447, 53.447, 192.604, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 21.1

Iron Binding Sites:

The binding sites of Iron atom in the Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark (pdb code 6kao). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark, PDB code: 6kao:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 6kao

Go back to Iron Binding Sites List in 6kao
Iron binding site 1 out of 2 in the Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:14.8
occ:1.00
FE A:HEM201 0.0 14.8 1.0
C A:CMO202 1.7 14.2 1.0
NA A:HEM201 2.0 15.0 1.0
NB A:HEM201 2.0 12.6 1.0
NE2 A:HIS87 2.0 15.1 1.0
ND A:HEM201 2.0 15.1 1.0
NC A:HEM201 2.0 14.1 1.0
O A:CMO202 2.9 15.9 1.0
CE1 A:HIS87 3.0 15.2 1.0
C1A A:HEM201 3.0 16.0 1.0
CD2 A:HIS87 3.1 15.4 1.0
C4D A:HEM201 3.1 18.2 1.0
C1B A:HEM201 3.1 14.8 1.0
C1C A:HEM201 3.1 14.6 1.0
C4A A:HEM201 3.1 15.2 1.0
C4B A:HEM201 3.1 14.0 1.0
C4C A:HEM201 3.1 12.1 1.0
C1D A:HEM201 3.1 15.8 1.0
CHA A:HEM201 3.4 17.2 1.0
CHB A:HEM201 3.5 15.7 1.0
CHC A:HEM201 3.5 14.7 1.0
CHD A:HEM201 3.5 16.2 1.0
ND1 A:HIS87 4.1 16.0 1.0
CG A:HIS87 4.2 16.0 1.0
C2A A:HEM201 4.3 16.6 1.0
C3C A:HEM201 4.3 13.6 1.0
C2C A:HEM201 4.3 12.8 1.0
C3A A:HEM201 4.3 17.4 1.0
C2B A:HEM201 4.3 13.6 1.0
C2D A:HEM201 4.3 19.1 1.0
C3B A:HEM201 4.3 13.7 1.0
C3D A:HEM201 4.3 16.8 1.0
NE2 A:HIS58 4.4 21.7 1.0
CG2 A:VAL62 4.9 28.7 1.0

Iron binding site 2 out of 2 in 6kao

Go back to Iron Binding Sites List in 6kao
Iron binding site 2 out of 2 in the Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Carbonmonoxy Human Hemoglobin C in the R Quaternary Structure at 95 K: Dark within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:20.1
occ:1.00
FE B:HEM201 0.0 20.1 1.0
C B:CMO202 1.8 18.9 1.0
NE2 B:HIS92 2.0 21.1 1.0
NA B:HEM201 2.0 18.0 1.0
NC B:HEM201 2.1 19.6 1.0
NB B:HEM201 2.1 18.9 1.0
ND B:HEM201 2.1 20.7 1.0
O B:CMO202 2.9 20.9 1.0
CE1 B:HIS92 3.0 22.1 1.0
C4A B:HEM201 3.0 22.0 1.0
CD2 B:HIS92 3.1 21.9 1.0
C1A B:HEM201 3.1 19.4 1.0
C1C B:HEM201 3.1 17.5 1.0
C4D B:HEM201 3.1 21.3 1.0
C1B B:HEM201 3.1 19.1 1.0
C4C B:HEM201 3.1 20.1 1.0
C4B B:HEM201 3.1 20.0 1.0
C1D B:HEM201 3.1 22.5 1.0
CHA B:HEM201 3.5 24.2 1.0
CHB B:HEM201 3.5 20.4 1.0
CHC B:HEM201 3.5 19.4 1.0
CHD B:HEM201 3.5 23.0 1.0
ND1 B:HIS92 4.1 22.2 1.0
CG B:HIS92 4.2 18.4 1.0
C3A B:HEM201 4.2 23.2 1.0
C2A B:HEM201 4.3 22.4 1.0
C2C B:HEM201 4.3 18.4 1.0
C3C B:HEM201 4.3 18.6 1.0
C3D B:HEM201 4.3 21.3 1.0
C3B B:HEM201 4.3 18.3 1.0
C2B B:HEM201 4.3 21.7 1.0
C2D B:HEM201 4.3 22.4 1.0
NE2 B:HIS63 4.5 37.0 1.0
CG2 B:VAL67 4.7 53.6 1.0

Reference:

N.Shibayama, A.Sato-Tomita, M.Ohki, K.Ichiyanagi, S.Y.Park. Direct Observation of Ligand Migration Within Human Hemoglobin at Work Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
Page generated: Tue Aug 6 23:51:24 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy